DreEX6083708 @ danRer10
Exon Skipping
Gene
ENSDARG00000026634 | ehmt1b
Description
euchromatic histone-lysine N-methyltransferase 1b [Source:ZFIN;Acc:ZDB-GENE-080515-3]
Coordinates
chr21:14566892-14567775:-
Coord C1 exon
chr21:14567612-14567775
Coord A exon
chr21:14567098-14567256
Coord C2 exon
chr21:14566892-14566960
Length
159 bp
Sequences
Splice sites
3' ss Seq
CTGTTCTGACTTCACAACAGCCA
3' ss Score
5.39
5' ss Seq
CAGGTGGGA
5' ss Score
6.71
Exon sequences
Seq C1 exon
TTGAACCCAGACCTGTCTCTCCCTCAGTAGCAGCCGTATCAAGGAAGAAAAAAAGAAAGATGGGAACATATAGTCTTGTACCCAAGAAGAAAAACAAAGTCTTGAAACAACGCACAGTTCTGGAGATGTTTCAGCAGATATCCCAGTCTCCACCCAACCCTAAG
Seq A exon
CCAAAGGAGATTGTGCGTGTGAATGGAGAGAAAATGGATAATGAGTCTGATGAGGAGGAGTCAGAGGAAGGGGAAGACACAGAGGATGAAGAAGAGCTAGTCACAGAAGATGGAGCCAAAGCTTCACATGAGGAACCTAGGATACCTTCGATCTCACAG
Seq C2 exon
CCCCTGGAAGAAGAGTCTGAGGAGTCTCAAGACTGTGAAGGTGAAGAGGAAGGGGATGAATCAGACTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000026634-'18-11,'18-10,20-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.975 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAACCCAGACCTGTCTCTCC
R:
AGTCTGATTCATCCCCTTCCTCT
Band lengths:
230-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]