GgaEX0012376 @ galGal4
Exon Skipping
Gene
ENSGALG00000008472 | EHMT1
Description
histone-lysine N-methyltransferase, H3 lysine-9 specific 5 [Source:RefSeq peptide;Acc:NP_001012550]
Coordinates
chr17:2043771-2045691:+
Coord C1 exon
chr17:2043771-2043907
Coord A exon
chr17:2044766-2044954
Coord C2 exon
chr17:2045611-2045691
Length
189 bp
Sequences
Splice sites
3' ss Seq
TGTGCTTGGACAACTTCCAGAGT
3' ss Score
3.25
5' ss Seq
AAGGTATTC
5' ss Score
6.8
Exon sequences
Seq C1 exon
CTGCTGCAGTATCTCGAAAGAAAAAACGGAGAATGGGAACCTATAGCCTGGTTCCCAAGAAAAAGACCAAAGTGTTAAAACAGAGAACAATGATTGAGATGTTTAAGAGCATAACTCATTCCTCTGCGGGTGCCAAG
Seq A exon
AGTGAAAAGGAGCTAGGTGATGTCAGCCCTCACGTGAATGGGGAGAGCATAGATGTAGACTCTGAAGAGGAAGACTCTGATGAGTTGGAAGATGAGGACGATCACGGAGCAGAACAGGCAGCTGCATTTCCTGCAGACGATAACAGGACCTCTAAAGACAGCGCGTCTGACGCAGACAATGTCAGAAAG
Seq C2 exon
ATTGATGATGGCGACTCTGAGGAGGAACAAGAGTCTGCAGAATCTGGAGAGGATGAGGAGGATGGAGATGAATCTGACTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008472_MULTIEX2-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.978 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTGCAGTATCTCGAAAGA
R:
CAAGTCAGATTCATCTCCATCCTCC
Band lengths:
218-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]