GgaINT0126640 @ galGal4
Intron Retention
Gene
ENSGALG00000008472 | EHMT1
Description
histone-lysine N-methyltransferase, H3 lysine-9 specific 5 [Source:RefSeq peptide;Acc:NP_001012550]
Coordinates
chr17:2043771-2044954:+
Coord C1 exon
chr17:2043771-2043907
Coord A exon
chr17:2043908-2044765
Coord C2 exon
chr17:2044766-2044954
Length
858 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
TGTGCTTGGACAACTTCCAGAGT
3' ss Score
3.25
Exon sequences
Seq C1 exon
CTGCTGCAGTATCTCGAAAGAAAAAACGGAGAATGGGAACCTATAGCCTGGTTCCCAAGAAAAAGACCAAAGTGTTAAAACAGAGAACAATGATTGAGATGTTTAAGAGCATAACTCATTCCTCTGCGGGTGCCAAG
Seq A exon
GTGAGGGCTGTGCTGAGTCGGCCGGGCACGTTTGCTGTCACCACACATGCACCTTGTCCTGCAACACCAGCCCCATGGGTAGTGTAGGAACATTGTTGCTGTCAGCATCTTCTGTTCTGAGTCTACATCTTCTCTCTGGCAACAACATCCTGCCCACAGCAGCCTTGCTGCTTTGAAAGTGGCTTTTTGAGGGTGGCTGTTCAGATAGCAGCTCTTGCAATGTTTTCCAGTGGATGTTCCCCTTCTGTCCTGTGAATGCTGTGGGACTGGAGAGTTTTCAAGCATACCACATCGTGGTAACGTTTTTGTTGTGGAGTCCTTAGGGTTACTGTCTACTGTACGTTTGAGGCTGTAAGGGAAAACAAGCAGTTACTTAAAAACAAACCACAGGCTGGGTTTCCCTCCTGATCAGGTTCTGCTTTTGCTGCACTCTGGGCCCTAAAGTTTTGGCCTTTGAATTCAAGTGAATTTGAAGCGCTAGGCATCAGTGAAGTGGAGTAAAAATCCCCCAGTCTGATTTAACCTCCCTTTATTTAGAAACCTTCTTTGCACCCTTGGTGTTCCATGGGGAGATGCCCTTTCAGTTAGTCTGCATGGTCTGGCTGAAAGCCGCTGTCCAGCAGCCCTCCCCTTAGTGCCTTGAGTCCAGAATGACTCCTTGTTCCCCAGACTGGCAGGCTTAGGTGACACATGGCAGGCGCCTGCACTGCCTGTGCTGGTGGTGTTGGAGGGCTCTGGAGGGACATAAAGCTAGCTCTCCCTTGGCAGCTTTAACACAGGCGGTCTGGGATGGGTTCAGCTGCTCTGAGCTGTGAACTGATGTTGTCTTTGTGGCACGTGTGCTTGGACAACTTCCAG
Seq C2 exon
AGTGAAAAGGAGCTAGGTGATGTCAGCCCTCACGTGAATGGGGAGAGCATAGATGTAGACTCTGAAGAGGAAGACTCTGATGAGTTGGAAGATGAGGACGATCACGGAGCAGAACAGGCAGCTGCATTTCCTGCAGACGATAACAGGACCTCTAAAGACAGCGCGTCTGACGCAGACAATGTCAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008472:ENSGALT00000013807:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.978 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTGCAGTATCTCGAAAGA
R:
CTTTCTGACATTGTCTGCGTCA
Band lengths:
326-1184
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]