BtaINT0054910 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012148 | EHMT1
Description
Bos taurus euchromatic histone-lysine N-methyltransferase 1 (EHMT1), mRNA. [Source:RefSeq mRNA;Acc:NM_001099041]
Coordinates
chr11:105477447-105477892:-
Coord C1 exon
chr11:105477756-105477892
Coord A exon
chr11:105477636-105477755
Coord C2 exon
chr11:105477447-105477635
Length
120 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
CTGCGTCTGCCCTCTTCCAGGGT
3' ss Score
11.11
Exon sequences
Seq C1 exon
CAGCTGCAGTATCTCGGAAGAAAAAGCGAAGAATGGGAACCTATAGCCTGGTTCCTAAGAAAAAGACCAAAGTGTTAAAGCAGAGGACGGTGATTGAGATGTTTAAGAGCATAACTCATTCCACGGGGGGTTCCAAG
Seq A exon
GTAAGGGGTGTGCCAGGCTGTGGGGGGGCCCTCTGCCTCTCTGCTCTGCTCCAGGGCAGCCCCTGCCATGCCCACTGGGAGGAGTCAGGGGGTCCCGACGCTGCGTCTGCCCTCTTCCAG
Seq C2 exon
GGTGAGAAGGATCTGAGCGATGGCTCCCTCCATGTGAACGGTGAGAGCCTGGATCTGGACTCGGAGGAGGATGACTCGGAGGAGCTGGACGAGGATGAGGACCAGGGCGGCCCACCAGCAGCTGCGTTCCCTACTGAGGATGGCAGGGCCTCCAAGGATGGCGTGTTGGCGCCTGACTGCAGCCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012148:ENSBTAT00000016118:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.848 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCTGCAGTATCTCGGAAGA
R:
CTGGTCCTCATCCTCGTCCAG
Band lengths:
242-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development