RnoINT0053561 @ rn6
Intron Retention
Gene
ENSRNOG00000007242 | Ehmt1
Description
euchromatic histone lysine methyltransferase 1 [Source:RGD Symbol;Acc:1307588]
Coordinates
chr3:2036883-2037677:-
Coord C1 exon
chr3:2037520-2037677
Coord A exon
chr3:2037072-2037519
Coord C2 exon
chr3:2036883-2037071
Length
448 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
TGTGCATTGCTATGTTCCAGGGT
3' ss Score
7.61
Exon sequences
Seq C1 exon
CTTGCTTGCCTTTTGTTTTAGCAGCTGCAGTGTCTCGGAAGAAAAAACGAAGAATGGGAACCTATAGCTTAGTTCCCAAGAAAAAGACCAAAGTATTAAAGCAGAGGACGGTGATTGAGATGTTTAAAAGCATCACTCATTCCACTGTGGGTGCCAAG
Seq A exon
GTAAGAGGGTGCCGGGATTGTTTGCCACAAAGTCTTGGAGATGTGTTCCTGGTTCCAGAGTCTCTTTGACTAGGAGAACATTTTGTTGAGGTCACTGATTTAATGACCTTAGTCACCATGAAAAGAACTATTGTTCTTGAGCTCTTCTGCCTGGTGTAGGTGGCTTGTTGACCCACATACTCCAGGAACCCTCCTGCTGGCTTCTTCAGGTGGTAACTGCCCCGTGCCCCAGCACTGGCAGGCCTTCCATCTCCTGTCAGACAAGTTCATAGCGATTTTCAGTCAGGTTTTCACGTGCTGGACAGCAGTACTCTTTTTTTCTTTTCTTCCCCCCTCGGAGCTGGGAACCGAACCCAGGGCCTTGTGCTTGCTAGGCAAGCGCTCTACCACTGAGCTAAATCCCCAACCCCAGCAGTACTCCTGAGAGCTGTGCATTGCTATGTTCCAG
Seq C2 exon
GGTGAGAAAGTCTTAGATGATAGTGCCCTGCATGTAAATGGCGAGAGCTTGGAGATGGACTCCGAGGAGGAAGACTCTGAGGAGCTGGAGGATGAGGAGGACCGTGGCGCTGAGCAGGCTGCTGCATTTCCCACTGAGGACAGTAGGACTTCTAAAGAGAGCATGTCTGAGACTGATCGTGCTGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007242:ENSRNOT00000066777:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.534 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTGCCTTTTGTTTTAGCAGCT
R:
TTGCAGCACGATCAGTCTCAG
Band lengths:
342-790
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]