HsaINT0054740 @ hg38
Intron Retention
Gene
ENSG00000181090 | EHMT1
Description
euchromatic histone lysine methyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:24650]
Coordinates
chr9:137743371-137744090:+
Coord C1 exon
chr9:137743371-137743528
Coord A exon
chr9:137743529-137743901
Coord C2 exon
chr9:137743902-137744090
Length
373 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
TACACCTGCCCGTGTTCTAGGGG
3' ss Score
8.41
Exon sequences
Seq C1 exon
CTTGCTTGCCTTTTGTTTTAGCAGCTGCAGTATCTCGGAAGAAAAAACGAAGAATGGGAACCTATAGCCTGGTTCCTAAGAAAAAGACCAAAGTATTAAAACAGAGGACGGTGATTGAGATGTTTAAGAGCATAACTCATTCCACTGTGGGTTCCAAG
Seq A exon
GTAAGAGACGCATTTGAGTGAGTTGCCACGTGTGCGTGGAAATGCGTTTCTGTGTTCAGGGCCTCGTTATCAGTAATTTGGGTGACCTCAGTCCCCGGGAAGGTGCCAGTGCCATGAAGCTCCTCTGCCATAGGGGCAGAGTGTTCGTGTCCAAGATCATTGTGGGGGACTCCACCCCGTCCTCCCTGCCCTCCTCACCACAGCCCACCTGTCTGCCGGGCTCTTCTCCAGGTGGCAGGGGCACCTCTTCGTGTGTCCCCGCCTCCCCACAGGCCCTTGCACCTCCCAGTCACCCAAGACTCCTCAGTGAAAGCAAGTTTGTTCATGATGCGCACTGATCCTGCCTTGGGGTATACACCTGCCCGTGTTCTAG
Seq C2 exon
GGGGAGAAGGACCTGGGCGCCAGCAGCCTGCACGTGAATGGGGAGAGCCTGGAGATGGACTCGGATGAGGACGACTCAGAGGAGCTCGAGGAGGACGACGGCCATGGTGCAGAGCAGGCGGCCGCGTTCCCCACAGAGGACAGCAGGACTTCCAAGGAGAGCATGTCGGAGGCTGATCGCGCCCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000181090:ENST00000460843:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.452 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTGCCTTTTGTTTTAGCAGCT
R:
CTTCTGGGCGCGATCAGC
Band lengths:
344-717
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development