DreINT0061779 @ danRer10
Intron Retention
Gene
ENSDARG00000026634 | ehmt1b
Description
euchromatic histone-lysine N-methyltransferase 1b [Source:ZFIN;Acc:ZDB-GENE-080515-3]
Coordinates
chr21:14567098-14567716:-
Coord C1 exon
chr21:14567612-14567716
Coord A exon
chr21:14567257-14567611
Coord C2 exon
chr21:14567098-14567256
Length
355 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGA
5' ss Score
6.8
3' ss Seq
CTGTTCTGACTTCACAACAGCCA
3' ss Score
5.39
Exon sequences
Seq C1 exon
ATGGGAACATATAGTCTTGTACCCAAGAAGAAAAACAAAGTCTTGAAACAACGCACAGTTCTGGAGATGTTTCAGCAGATATCCCAGTCTCCACCCAACCCTAAG
Seq A exon
GTCAGAAGTTGAACCACCAAATTAAAACCTTTTCTTACTGTGTTATTAAAAGTTACCTCTGAGTTGCATAGGCGGAGTTTTGATTGGAAGTAATATTTTCTTAATGTTGTATTGCATGTTGGTTGACCCTTCCTGTACTTCAGAAAGCTGCAGGGGGTCGTACAACAGACTCAAAGCACCACGTCCTGTCATGGGATGCTTTTTAGAGTCATACACATTGTTTTCTATAAGGGAACGCACACCAGTACTGCTATTCGGTGTATGAAAGAATTGCCTACCATTGTTTTGGAAACCATTGGAAGCCATTGGAACATTGATATCTAATGCCAGTCTTTCTGTTCTGACTTCACAACAG
Seq C2 exon
CCAAAGGAGATTGTGCGTGTGAATGGAGAGAAAATGGATAATGAGTCTGATGAGGAGGAGTCAGAGGAAGGGGAAGACACAGAGGATGAAGAAGAGCTAGTCACAGAAGATGGAGCCAAAGCTTCACATGAGGAACCTAGGATACCTTCGATCTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000026634:ENSDART00000124223:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.956 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGAACATATAGTCTTGTACCCA
R:
TGTGAGATCGAAGGTATCCTAGGT
Band lengths:
262-617
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]