MmuINT1009381 @ mm10
Intron Retention
Gene
ENSMUSG00000036893 | Ehmt1
Description
euchromatic histone methyltransferase 1 [Source:MGI Symbol;Acc:MGI:1924933]
Coordinates
chr2:24863223-24863929:-
Coord C1 exon
chr2:24863772-24863929
Coord A exon
chr2:24863412-24863771
Coord C2 exon
chr2:24863223-24863411
Length
360 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
TGTGAACTGCTGTGTTCCAGGGC
3' ss Score
7.98
Exon sequences
Seq C1 exon
CTTGCTTGCCTTTTGTTTTAGCAGCTGCAGTATCTCGGAAGAAAAAACGAAGAATGGGAACCTATAGTTTAGTTCCCAAGAAAAAGACCAAAGTATTAAAACAGAGGACGGTGATTGAGATGTTTAAAAGCATAACCCATTCCACTGTGGGCGCCAAG
Seq A exon
GTAAGAGGGATGCAGGGATTGTTTGCCATATATTGTTGGAAATGTATTCCTGGTTCCAAAGTTCCTGGCCAAGAGAACATTCTGTTGAGGTCATTACTAATTTAATGACCTTAATCACTATAAAAGGAACTGGAGTTCTTGAGCTCTTGTGCTCTAGCATAGCCTCGTGTGGGTGCATTGCTGACCCCGAACACATACTCCAGGGATCCTTCCTGCCGGCTTCTTCGGCTGGTAGTTGCCAATGCACCCCAGTACTGGCAGACCTTTCCATCTCCTGTCACACGAGTTCGTAGTGAGTCAGTCAAGGTTTTATGTGCTGGACAGCAGTACTCCTGAGAAGTGTGAACTGCTGTGTTCCAG
Seq C2 exon
GGCGAGAAAGCCTTAGATGATAGTGCCCTGCATGTAAATGGCGAGAGCTTGGAGATGGACTCAGAAGATGAAGACTCCGATGAGCTGGAGGATGACGAGGACCATGGAGCTGAGCAAGCGGCTGCATTTCCCACCGAGGATAGTAGGACTTCTAAAGAGAGCATGTCTGAGACTGACCGGGCTGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036893:ENSMUST00000147147:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.451 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTGCCTTTTGTTTTAGCAGCT
R:
CTTTGCAGCCCGGTCAGTC
Band lengths:
344-704
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types