GgaINT0126640 @ galGal3
Intron Retention
Gene
ENSGALG00000008472 | F1P2X9_CHICK
Description
NA
Coordinates
chr17:2451074-2452257:+
Coord C1 exon
chr17:2451074-2451210
Coord A exon
chr17:2451211-2452068
Coord C2 exon
chr17:2452069-2452257
Length
858 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
TGTGCTTGGACAACTTCCAGAGT
3' ss Score
3.25
Exon sequences
Seq C1 exon
CTGCTGCAGTATCTCGAAAGAAAAAACGGAGAATGGGAACCTATAGCCTGGTTCCCAAGAAAAAGACCAAAGTGTTAAAACAGAGAACAATGATTGAGATGTTTAAGAGCATAACTCATTCCTCTGCGGGTGCCAAG
Seq A exon
GTGAGGGCTGTGCTGAGTCGGCCGGGCACGTTTGCTGTCACCACACATGCACCTTGTCCTGCAACACCAGCCCCATGGGTAGTGTAGGAACATTGTTGCTGTCAGCATCTTCTGTTCTGAGTCTACATCTTCTCTCTGGCAACAACATCCTGCCCACAGCAGCCTTGCTGCTTTGAAAGTGGCTTTTTGAGGGTGGCTGTTCAGATAGCAGCTCTTGCAATGTTTTCCAGTGGATGTTCCCCTTCTGTCCTGTGAATGCTGTGGGACTGGAGAGTTTTCAAGCATACCACATCGTGGTAACGTTTTTGTTGTGGAGTCCTTAGGGTTACTGTCTACTGTACGTTTGAGGCTGTAAGGGAAAACAAGCAGTTACTTAAAAACAAACCACAGGCTGGGTTTCCCTCCTGATCAGGTTCTGCTTTTGCTGCACTCTGGGCCCTAAAGTTTTGGCCTTTGAATTCAAGTGAATTTGAAGCGCTAGGCATCAGTGAAGTGGAGTAAAAATCCCCCAGTCTGATTTAACCTCCCTTTATTTAGAAACCTTCTTTGCACCCTTGGTGTTCCATGGGGAGATGCCCTTTCAGTTAGTCTGCATGGTCTGGCTGAAAGCCGCTGTCCAGCAGCCCTCCCCTTAGTGCCTTGAGTCCAGAATGACTCCTTGTTCCCCAGACTGGCAGGCTTAGGTGACACATGGCAGGCGCCTGCACTGCCTGTGCTGGTGGTGTTGGAGGGCTCTGGAGGGACATAAAGCTAGCTCTCCCTTGGCAGCTTTAACACAGGCGGTCTGGGATGGGTTCAGCTGCTCTGAGCTGTGAACTGATGTTGTCTTTGTGGCACGTGTGCTTGGACAACTTCCAG
Seq C2 exon
AGTGAAAAGGAGCTAGGTGATGTCAGCCCTCACGTGAATGGGGAGAGCATAGATGTAGACTCTGAAGAGGAAGACTCTGATGAGTTGGAAGATGAGGACGATCACGGAGCAGAACAGGCAGCTGCATTTCCTGCAGACGATAACAGGACCTCTAAAGACAGCGCGTCTGACGCAGACAATGTCAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008472:ENSGALT00000013807:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.978 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTGCAGTATCTCGAAAGA
R:
CTTTCTGACATTGTCTGCGTCA
Band lengths:
326-1184
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]