GgaINT0126641 @ galGal4
Intron Retention
Gene
ENSGALG00000008472 | EHMT1
Description
histone-lysine N-methyltransferase, H3 lysine-9 specific 5 [Source:RefSeq peptide;Acc:NP_001012550]
Coordinates
chr17:2044766-2045691:+
Coord C1 exon
chr17:2044766-2044954
Coord A exon
chr17:2044955-2045610
Coord C2 exon
chr17:2045611-2045691
Length
656 bp
Sequences
Splice sites
5' ss Seq
AAGGTATTC
5' ss Score
6.8
3' ss Seq
GGGGCACATGGTGGCTGCAGATT
3' ss Score
1.27
Exon sequences
Seq C1 exon
AGTGAAAAGGAGCTAGGTGATGTCAGCCCTCACGTGAATGGGGAGAGCATAGATGTAGACTCTGAAGAGGAAGACTCTGATGAGTTGGAAGATGAGGACGATCACGGAGCAGAACAGGCAGCTGCATTTCCTGCAGACGATAACAGGACCTCTAAAGACAGCGCGTCTGACGCAGACAATGTCAGAAAG
Seq A exon
GTATTCACATGCCCCGTGCAGGACTTAGAGTGGGATGGGACACTGCTGATCCCTGTCAGACAGGAGTGGAATCAGTTGAGGCAATTCCTAGGAATTTTTTAGCATGCAAGATGGCAGAAAGCTCAGTGGTGGAAGTGAGGCTTTTGATGACCACTTCCTGCTTCCTTTTCCCCTCCCCCATGAGAGTCTCCTCGCCTACCCTCCTGTTTCAGCCTTGCTACATAACTCTCTGTGATCCAATGTATGTGCAGGACTTCCATCACAGTTAGGTATTCACTGCACCAGCAGGAGATGTCTTCCTAATCTTGTTACAGGCTGGTAAAGAATTAAAATTGTTTTAGTTAACTTACCCCAAATCACAATACATATTGTAGGTATGAGGTTGTTTCTTATTAATCACAGAAATTAATGTTTGGTTGGAAAACTTTCTTTGGGAGTTATCCTGTCCCATCCTCATGGGTGAACCATGAAGTACATTAACAGTCTTGGAGTGCCTGTCCTGGAAAGGAGATGGTGTTAGTGCTCACATGGCTGGGGCTGAGTGCAGCTCGGCGATGGGATGCTCTGTAGGGTCAGGCAGGGTGTGGAGGGGTGCCGTGCTCGGAGGGACCTGATGGGACTGACTCTTTCTGTTCTGGGGCACATGGTGGCTGCAG
Seq C2 exon
ATTGATGATGGCGACTCTGAGGAGGAACAAGAGTCTGCAGAATCTGGAGAGGATGAGGAGGATGGAGATGAATCTGACTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008472:ENSGALT00000013807:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGAAAAGGAGCTAGGTGATGT
R:
CAAGTCAGATTCATCTCCATCCTCC
Band lengths:
270-926
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]