RnoINT0053562 @ rn6
Intron Retention
Gene
ENSRNOG00000007242 | Ehmt1
Description
euchromatic histone lysine methyltransferase 1 [Source:RGD Symbol;Acc:1307588]
Coordinates
chr3:2030744-2037071:-
Coord C1 exon
chr3:2036883-2037071
Coord A exon
chr3:2030865-2036882
Coord C2 exon
chr3:2030744-2030864
Length
6018 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
3' ss Seq
CTTGCTCTTTGGTCCTCCAGAGT
3' ss Score
8.56
Exon sequences
Seq C1 exon
GGTGAGAAAGTCTTAGATGATAGTGCCCTGCATGTAAATGGCGAGAGCTTGGAGATGGACTCCGAGGAGGAAGACTCTGAGGAGCTGGAGGATGAGGAGGACCGTGGCGCTGAGCAGGCTGCTGCATTTCCCACTGAGGACAGTAGGACTTCTAAAGAGAGCATGTCTGAGACTGATCGTGCTGCAAAG
Seq A exon
GTAGGAAGGACTCCACTTCTCCAGGTGCTGGCACCAGTGAATGAAACCATGAAGTGCACTGTAGCTTCTAAGATTCTGGGCACTGTTACGTGCTGCTGAATTCTTTTTTCTTTTTATTTAACATTTATAAAAAGTTAAGTAGCTGGGCATGGTGGCTCAGGAGGTAGAGGCAGGCCGAGCCCTGAGTTCATGCCTGCCTGAACTGCTTAGTAATACTCCATCTCCAAACATGAAAAAGAAAAACAGTTAAATATCTGCCAGCCAACAGAAGAACCAAGAAACAAAAAGGTAGATCAGAAAGAAAATGTCATTCTGGGAAACAGAGTAAGATGGCTAGAGTAAATCTCATTGAGTCAGTAGTGGTTTTGTTATGTAAACAATTTTTAAAGGATAAAGATAGAAAAAGCATTGTGCTCATTTTTAGGCAACATTCTCATAAAATCCCTAATAGTAGTCACAGTAATGGCTGGAAAAGATTGATTGATTAATAGGAATTCTTTTTTTTTTTTTTCGGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTCCTAGGCAAGCGCTCTACCACTGAGCTAAATCCCCAGCCCCTTAATAGGAATTCTTAACTGGACTTACTAAAGTAACAAAGAAAAGCCAAAGAGTGTGTGTACTTCACACACACACACACACACACACACACACACACCCCGGTGTAGCCCTGCCTGTCTTAGAACTAACTTACTGTGTAGACCAGGCTGAGCTCAAACTCAGGATGTACCTGCCTCTGTCTCCCAGTGCTGGGATTAAAGCTGTGCTTGGCTTCTAGCTGGCGTTTTCAGTAATCAGTCAGACACGGTGTCATGTACCCATAGTGTCAGATGCTTGGAGGATGGAGGCAGTAGGTGAATTGAACCTAGACTTTGAGACTAGTCAGTAACATTCCAGGATCCCATCGTACATTTGTGCTGTTTGTTCTTCCATAAGCAGAACTTCACAGCACATCCTTTTTGCATATTTGTTTTATTTTCTTGTTGCTGTACAGCTTGTCTCACCTACTATGTTTAGACTTTTGTTCATTTTCATTCTTGTTGAATCCAGGTGGTCTGGGGATCTCTGAAACTGTTAAAGGAGATCTGTCAGACTGGAACTATCATCATGTGCTCAGGTGTCTGCCTATTTAGTGCCTAGAGACTTATATGTGTTTCTGTCTTTGCATCGATGACTTAACTCATCTTCTAAGTTGAGCATTCTCAATCTAAAACTACTGGGATAAATATAAGTAGGCAAATTAACAGAAGTGCTTCATAGTTCTTAGTAATTCTCGTAGAGAATATAGGGATCCTGAGACACTGTGCTTATGTACCACAGTCCTTTATGAGATTTTATCCCTGTCGAGATGTCCATTACCTTCTCTGTGCGCACTGTATATAAGACTTTTTGATGTGACAGTCCCACCAATAGCCTATGCACAGGTCGTTTCCTGGTACAAACTGGGAGTAGGTTACTGTGCCTGTTAGTCCACAGATGCTGCTATACTGGTATGAAGAGGATTGCAGGCATTTATAGCTCTGCCAGATGCTTCTGAGCACCCTGTCCATTGCGCAGGCTTGTCAGTTTTGCCACTGTCTAGTCAGTGAGTATATATTGCTAGAACGTATGTTTTCCTGATTTCTAGAAGATTGAATACTATTCTTTATGCTTGTTTTCCATTTGTATACTGACCTAGTTACTGTTCTGTTGCTTTGAAGATATGATTCTGGCAACTCTTATTAAAGCAAGCATTTAATTGCGGCTTGCTTACACTTTCAGAGGGGTTAGCCCATTATTATCATGGTAGGAAGCATGGTATCACTGGTGCTGGAGGAGTAGCTGAGAATTCTTTATCTGGATCCACAGGTAGCAGGAAGTCTGGGCCCAGTGTGGGCTTCTGAAACCTCAAAGTCCACCCCCAGTGACACACTTCCTCCAACAAGGCCACACTTCCTAATCCTTATAATCCTTTCAAATAGTGCTACTTTTCAGTGACTAAGCATTCAAATATATGAGTCTGTGGGGGCCATTCTTACTCAAACCACCACAGATGGTTTCTTTTGTGAAGAACCTGATCAAGTATCAGCCATTTATCTATTAGATATTAAGTTGCCTGTCTTCTCATTTTGTAGATGGTCTGATTCAGAAATGATTCCCGTTTATGTAGTCAGCACAAGATTATGTTCTACTGTGGCCTGCTCAGTCATAGTGGGATGGTGCTGTCCTCTGGCTGTATGGATTGAAGCTGGACTAGATGGGTCCATTTGTGCACACTGGCTGCTTAGGGTGCCGTACCTCTTAGCTAGCTGGAGAGCTGCGGCTGCTGTCGGGGTTGTCCCCTGCTGTTTGGACAGCGAGAAAGCTTCCTCTGCCCACTGGGCACAGCTTTTAGTTGCACCATTTGGTTCCTCATTTCTGCCTTAGTCTGCCCAGTAGTGCGCTTTTGTCTATTTTGTTTTTGTTGTTATTTTGTTTTTTTGTGGGTGGTGGTGGTGGTGGTGGTGAAAACAGGGTTTCTCTGTGCAGCATTGGTTGTCCTGGAATTCCTTCTGTAGACCAGGTTAGCCTTGAACTTACAGCTCTTTCTGCCTCTGCCATCTGAGTGCTAGGAATAGAGTTGTGTGCCACTATTACCCGACAACCAGCTCTTTTCTCTCCCTTTTCCTTGGGATTTCAACTGTGTTTTCTTCCTTACATGTGTCACATGTGTAATTGTCACACAGCATTGTAAAAGCGGGCTGTCCTTTTCTAATTGGAGGTTGTATTGCTCAGTCATGTTTAAAATGAAACAAATAAACAAAACAATTGCCCAATGAATTAGAAGAAAACTTAAAATTATATAAAACTAACAAAGTACCAGAGTCCTACAATGAAGGCTATATTTAATGATGAAATTGGAAACCATTTTGATTATCAGTCATAAAATGAGAGTGAGTTTGCTGCTTTTAGCTTTAACACAAGGAGAATAATTTTGACTGATGCTTTAAGAAAAAAGCCAAGAAAGAAAATTTAATATTTAAAAGGAGAGGAGAGAAGATAAAAATCTACCTTAAAATCTTGGAAAAACCCCAGAAAGCTATTATAGCCATTGAACTAAACTTCCAAGTGATCGAGACATAGACATGTCTTATTTCCATGTAAAGTTGCAGTAAACACCAGCATATGTATAAATGCCTAGGCATGTTTTTAAAATGTCAAATAGAAAAGTTAATGTGGTGTGATGGCACTTACCAGAAATCCCAGCACCAGGAAGCAGAGGCAGGGTAATTCTTGGCATCTCCAGAGTCCCTAGGGTAGGTGACACATTCAACAATAATATGGTATAAGAGAACAGCAGAAATTTGTTAAATTAGGTTAGCAGGAGACCTACCATTTATGCAGATAAAAACTGCACTGTTTAGGTTTAGCTCTAAGTTCAGAACAGTTCTATCAGGATCTTTTTGTAGAGCTTCAAATTTTGAAGTTAATGGGCTATTGAGATGAAGAACTGTTGTGAGAATTGTGTGAGAGAATGTAGGAGTCATCATCAGTGTTGAGAATGGGCAAGGCACAAGATAAACATAGGATGTTAGTTATCAGGGAGAGAGAGAGCTACCGTTTGAATCAGGAGTGCCACATCTGTCCTCGCCTGCCTTTTGTGTTGGCTTGTTTGGAATGCAACGTGACTATGAACCCTACAGGTTCTGTTGAGCTGGGACTATCAGAGAGAAGTAAGATACTCTGGAGTAGATCCTACACAGAGTCAGACTACAGCACACCAGAGATCACTGTACTGACTTGGAGTTAGTGGATCTGGGGCAAATGAGGCAAATTCATTCGTTGACAGTGTAGATAGAAGCGATAAATATAGTAGTAAAAATAAGGTGTCTTTGTTGTTCTGTTATAGAAAGGCTTCCAAATCTTGTCTATCATTAGAAAAGAATAAATTTATTGAAGTTTGTCCAGCAGGGAAACAGGTTTAGGAATAGGCTTGGTATAGCTGGAAGTGATCAGGCAACATAGTAGTGATGGCTTTTGGGACTAGACTGTTCTTGGGTGAGCAGAGGAAGGTTTGGTTATGTATTATTTTATAGCTCTTTAGAATACCCCCCACCCCCACCGCGTGTGTGCATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTACTGCTTTTTACAGATATCTGGCATGCCTTACATGCACAGTAACCTCCAAGGTTCAGTTAATTCATTTGAGTCATCAAACTGAGTCCATTTGGGATAGAGTATCTTAGCAGGGAGTATTAGCAGAAACTCCGGTATCTTGTTGTCTGCTTGAAATTCCCTGGCCAGGCTGTCCAGACACCTTGATTTTACACTGGGGGCAGACAGGGAGGTCCCTTCTATGTATGTCTGCCAGTGTTTGTTAATATTTGTCTTGGATCCATCGCCTTCTACTACAGGATCTAAATGGTTTTTGTTTTTATTTGGCTTGATCAGATGGATGGAGATTCAGAGGAGGAACAGGAGTCTCCTGACACAGGGGAGGACGAAGACGGTGGAGATGAGTCTGACCTGGTAACCTCATATTTTTCTTATGTTACATAATTCACATCGGCAGCTGAGAGCACTGGTGGCATCTCTCGTGTATGCTGAGGTGCACGGGGTCTGACCTGAAGGAAGAGTGGTTAAGGAAGCCAAGGAGGTAGTGTAGAGTTGCAGCATAGGGGCAGGTAGAGCGGCTGTGCTGATGTGTTCGCTAGGACCTGTCAGCAGGCTAGGCTCTGAGGGGAGGAACGGGGGTTCTACAGTTTGATTTTCATACCATTGATGGCAGGCTGTCTGTTTATCTGGCAGGTAGAACCTGAGATCTGTAGGGCTGGGTATATTGGTATATATATATGGAAGCCATTGGACGGAGTCTCGGGAGTAACCCATGTGTGAATATTGAGTAGAGAAGTCCAGAAGCTTGTTAGCTTGAGGGAAGAAGTACTATGTGTGAGGTAAAGTATGGGACTAGGAACTGAGGAGGGAGCAAGTCTCCCCTGATGTCAGGCTTCATTGGTGAAGGAGAGGACAGCATATACAGGATCTTTGGGTTTGATGAGGAAACATTTCCTGGGACTCCACAGCATGATCCAGACAGTGGAAAATGTGATGAAGTTTTTTTTAGAAGTATTTCTATGTGAAAACGTAGGATAAAGTGAGGATTGGGGTTGCTTGTAGGGAGGAACCTGGACAATAGAAACGTGTGTTGTGCAGATGTTCCTCATCACTATTTTGCTGGGGTGACTGACGTAGACCCACACATTCAACCCAGGGCTTGGATGAGTACACATACTCGTCCATGTATATGGGGATGGCTCTGTATGCTGTGCCATGTGCCTCTACCTACGTGTCAGCAGGATGTCCCCAGTGTCTGTATCTGTCCTTGGGAATAGGGTTGAGAGACCCATGTACTTTCTTCATGTGACCGCTTTCCAGCATCTTTTTGCATTAGAATGGTGCTGTAGACTAGGACAATTGTGATTTTTGCTAGTTAGATGTCCTTTTTACACTTGCAACATAGGTACAGATATGCCATCTCTTGTGTTGCTATAAATTATCCCTCTGCCTTCTGCATGTAGTATGCACCTATGTGATTCTGGGGCACACTGAACATTGTTCCCTCCTGAGCGAGATGAGTGGATATGTGGAGCCAAAAGGAAATCACATACTGAGCTTATTTACTTAGTCCCAAGGAGAAATTTCCAGTTTATTTTTTTCCAGTATGCCAAATTCAAATACAACTTATACATTCTAAATTAGTTTTCTTGTCTAGTTGCCTCTAAAAGGACTGGGTTTACTGGGCTTACTGGGCTTACTGAGATGTTCAGGACCACCTTTAGAATGGAACCCAGAAACATGTGCAAAAGAGAAGTAGATCTTTTAGAGAAAGAATCAAGTATTTGATTTTTGAGGCAAACGAGTTGGTTCTTTTTGCTCTCAGGAGCTCCCCCTGCTTTGCTTCTGATATGCTTGCTCTTTGGTCCTCCAG
Seq C2 exon
AGTTCTGAATCTAGTATCAAGAAGAAATTTCTCAAGAGAAGAGGGAAGACTGACAGCCCCTGGATCAAACCTGCTCGGAAAAGGAGGCGGAGAAGCAGAAAGAAGCCAAGCAGCATGCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007242:ENSRNOT00000066777:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.878
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]