GgaINT0126642 @ galGal3
Intron Retention
Gene
ENSGALG00000008472 | F1P2X9_CHICK
Description
NA
Coordinates
chr17:2452914-2455183:+
Coord C1 exon
chr17:2452914-2452994
Coord A exon
chr17:2452995-2455062
Coord C2 exon
chr17:2455063-2455183
Length
2068 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGC
5' ss Score
8.72
3' ss Seq
TGGCCTCTCTGGTTATTCAGAGC
3' ss Score
6.71
Exon sequences
Seq C1 exon
ATTGATGATGGCGACTCTGAGGAGGAACAAGAGTCTGCAGAATCTGGAGAGGATGAGGAGGATGGAGATGAATCTGACTTG
Seq A exon
GTAAGCCTGGCTGCCAAATGCAGCTTTCAACCGTTGTCCTGCTGGTGATGATTTCCCCTTTGCACTGCTGCCAGAAGGAGACAGAGAAGCAGTGTAGTTTCAGGACTCTGACAAAACTCACTGGCTGAAGCCACCCATGCAAAGTATGGTTTTCCACAAGGTGCATAACAGTGATACACTTAATTGTTTTCCGATGCTAATTAATGGGCTATTTTTCTTGTTTTCAACAAGGTGTTGATTGCTTTTAATCATTTGAATGTTAGCAGAAATATTTAAGGGTGCTTAAATTCGTTGGGTGCAAATGTGGCAAGTGGTGGGAGCTAGCAGTGTTTTCCTAACAACCTGAAGCTCAGCTTGCCTCCAGAGCGAGTCCAGTTGGAGCTGTTCACAAATCCATTGGGCCAACCCACTGCCTAAATTCACCTCGTCTAACATACCACCTCAGAGGTATGGGCAGCCCTTGTCAGGCATATGTACAAACAGCATACAGAAAGACAGCCACTCTCCCTGGAAGGGTGTCTGGTAGTGCTAAGGCAAGATTTTCACCTGCTGTTTGATGATTTTGACTTCTTACTTTTCAGATGGCTGGTGAAGGGAACTTGAAAATGATTTTTTTATTTTATTTTTTTGAAATTGCTATTCATTGATTGTCTGTGTCTCCCCACACTCCCCTTTACTTTAAAAATGTTGCTCCCTTTTCACAGCATCTCAAGTTGAGGAGCCAGCATTTAAAGCACCCCAATGCTTCAGTCACCTTGAGAAAATTCTTGACTTCATTGTCTCAATGTTTTGAGCTGAAGGTAGAAGCAACTATACCAAATGAATTGTTGAAACTCTGTAGAATCTTGTTCCTTGTTCTCTGACGCTACAAGAGCCAGAGAGAATTAGGCAGGAGGGGCTGTATAGCCTGTGCCTTTCACTGGGCACCTGAGGCACTTTTGTAGTGCTAGATCAAACTAAGGGTTGAGCTTGCAATCAAGTCCAAACAGCCCAGTCATATCTAGACATCCTAGACTGTGATTTTTGCTGTGCTTATACATGGTGATTCAGCCTGGAGGCCAGATGGGGACTGGCTCAGATGCAAACCTCTCACCCACAAGTAGTGTGATGCAACTGGTGGAAGCTACGTGGTAAGGCACAGCCATGCACTTGGGCGCAGTGATTGTTGAGGCAGTGTAGACACCACTGCAGGGCTGCCCGGGGAGCCAGGGCTCAGCACCACCTTGGTCCTGCTGCACACTGTGGTAACAGGGCATGGTATAGCATCAGTTTCCTGTTAAGGTAGGCCACGAGTGTAGGCCCTGATCCAATCTCTGCTGAAGGCAGCAGGAGCTTTTTTATAGGCTTCAGTGAGAGATGGAGTGAGAGAGTTTCAGTTTGAACATGAGTTTTATAGTTGGAGCTTTGAATGCTGAACTGGAGTGCCTGGTTCCCCATTTTAATGTTGACTTTGAAAAGCCACCTGTATTTTCTGCATATTGAACAGGAAGGAAACCCAAACTCTGTTTAGATTCATACATGCCTGAAGATTGCTGTGTGATTAGGTTGTACTGATGTGACACCTTGCTCAGGGAGGGAGCTGGTCTCTGCTGTGCAGTTAAATTCCCCAGGGTCTGTCCCAGCCCCGTTAAACTGACTCTTCAGATACAAAAGATATATTTTTTTTTTAGCACGACTGTGGAGCAATATGAGTATTATAGTTTGAAAAAAGAAATAAAAAAGAAATAAAAGCCACTTTTCTGGGGAGAAGCTAAAAGTGTGTATGCATACTCACCCTGCTGTGCAGAGATGCTCAACTACTCCTGAGATGAGTGTGGTGTTAGAGCCCACATGGAAGAGAAGGTGAAGTGAGCACTGTTGAGATGACAGGAAATACGCCCACACGTGTGCTGGTGTTTCCTTTTCTGCACTATAAAGGCATCTTTGCACCAATTGATTTCAAACCTCAGTCCTTAAGGCCTTTTACACTTCTCAAGCTGTGTGAAGGCTCTTTCATATGAGTGCAAAGGACTGCTGTGATGCTGATACCAACATGCCTTACATGCACATGGCCTCTCTGGTTATTCAG
Seq C2 exon
AGCTCGGAGTCCAGCATCAAGAAGAAGCTGTTGAAGAGGAAAGGAAAGACGGACAGCCCATGGCTGAAACCCACCCGCAAGAGGAGACGGAGGAATAAAAAGAAACAAGCCAATGTGCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008472:ENSGALT00000013807:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.910
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]