DreINT0061794 @ danRer10
Intron Retention
Gene
ENSDARG00000026634 | ehmt1b
Description
euchromatic histone-lysine N-methyltransferase 1b [Source:ZFIN;Acc:ZDB-GENE-080515-3]
Coordinates
chr21:14566635-14566960:-
Coord C1 exon
chr21:14566892-14566960
Coord A exon
chr21:14566753-14566891
Coord C2 exon
chr21:14566635-14566752
Length
139 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
3' ss Seq
CTTATGTCTATCCTCTTCAGAGT
3' ss Score
8.22
Exon sequences
Seq C1 exon
CCCCTGGAAGAAGAGTCTGAGGAGTCTCAAGACTGTGAAGGTGAAGAGGAAGGGGATGAATCAGACTTG
Seq A exon
GTGAGTTATTAAACGTTTTCAAATATTGAGTGTTAAAGGACACTCGAATAACCAGGAGTAATTTAGATGGAAGGTTTTTCAGTTTCACAGATCTGTATTGCTCCATTTGTTGACTGTGACTTATGTCTATCCTCTTCAG
Seq C2 exon
AGTTCAGAATCCAGTTTGAAAAAGAAATGGAAAAAGAAAGCCAAAGGAGATCATGCCTGGCTCCGACCGTCAAGGAAACGCAAGAGGAAATGGAAAGCAAAAACGGACAAGGTTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000026634:ENSDART00000124223:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.900
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTGGAAGAAGAGTCTGAGGA
R:
CAGAAACCTTGTCCGTTTTTGCT
Band lengths:
186-325
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]