BtaINT0054912 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012148 | EHMT1
Description
Bos taurus euchromatic histone-lysine N-methyltransferase 1 (EHMT1), mRNA. [Source:RefSeq mRNA;Acc:NM_001099041]
Coordinates
chr11:105469130-105470262:-
Coord C1 exon
chr11:105470185-105470262
Coord A exon
chr11:105469251-105470184
Coord C2 exon
chr11:105469130-105469250
Length
934 bp
Sequences
Splice sites
5' ss Seq
TTGGTAACC
5' ss Score
3.53
3' ss Seq
GCCCTCTCCCCACTCCCCAGAGT
3' ss Score
8.21
Exon sequences
Seq C1 exon
GTGGACGGCGAGTCTGAAGAGGAGCAGGAGTCGGCCGGCACCGCGGACGAGGAGGAGGACGGAGACGAGTCCGACTTG
Seq A exon
GTAACCCCGGCGTGCGCGGATCCCTGGGTCCTGCGCGCAGAGTGGGAGGGGCCTCCGGGCCAGCGGGGCGGGGCTCAGAGCTGAGGGCGGGGTCGGAGGCTCGGCTGGCGGGCGGCGGGGCGGCGGGGCTCGGTGAGCTCGTGGCCGTGTCCGTCCAGCCAGAGCAGGTCTCTGAGAGGGAGACGGTGGCCACGTGGGGGCTGAGAGGAGGGCGCGAGGGCGGCGCTGTGGCGAGGCGCGTGTCTCCCCGGGGCCTGGCCCTGGTGCAGTGTAGCTCGCGCTGCTCCCTTCTCTGCGCGAGGCACAGGGCGCTGGGGCCCAGCTCCAGGCCCAGGCTCCCAGGCGGCTCTCGCGCAGGCGCTGAGCCGCCCCGGTATCTGAGGGTCTCGGGATTATAGGCCCTTAGGTGTCTTCTCACCCACGGCCAGCGAGGCTGCGAGACCCTCGTGTCAGACTTGGCAGCGTGGTCTGTGGGCTGGCTTTCTGTCTGGCTGGCTCAAGGCAGTTAGACCCTGCCTGCGTGGAGGTGTGAGATGCGGACACTCAGGAATCGTGGCGTGTCATGAGCGGTGACAGCCTCTTGCTCTCTGGGCTCTGGCTAACCTGGATGTAGACTTGAAGCAGACTGAAGCTTTGCTCCTTTTCTTTTGAGCACGGTGAATGGGTGCGTGTGACTGAAAGTGGACTCGCTTACTGAGCTGCTTTAGTGTCTGGTAGAACTCTCCCATGTATTTTTTTGTGTGTGTGCTGAAACTCAAGTAACGGCTTGGAGTGTGTTTAGGGACAAGCATGGGCATCTTTACGAATGTGACCTAGAAGGGACCGTCTGGGAGTGAGCGGGGTCTTGTGGGTGAGTGGTGGCCACAGGGCAGGAGCTGGAGCCTCTGCGCCCGGAGCCCACGCTCTGCCTTTCTGCCCTCTCCCCACTCCCCAG
Seq C2 exon
AGTTCTGAGTCCAGCGTCAAGAAGAAGTTCCTCAAGAGGAAGGGGAAGCCTGACAGCCCTTGGATCAAGCCAGCGAGGAAGAGGAGGCGGAGAAGCAAAAAGAAGCCCTGCTCTGTGTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012148:ENSBTAT00000016118:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.951
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGTCTGAAGAGGAGCAGGA
R:
CTAACACAGAGCAGGGCTTCT
Band lengths:
191-1125
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development