GgaINT0126642 @ galGal4
Intron Retention
Gene
ENSGALG00000008472 | EHMT1
Description
histone-lysine N-methyltransferase, H3 lysine-9 specific 5 [Source:RefSeq peptide;Acc:NP_001012550]
Coordinates
chr17:2045611-2047880:+
Coord C1 exon
chr17:2045611-2045691
Coord A exon
chr17:2045692-2047759
Coord C2 exon
chr17:2047760-2047880
Length
2068 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGC
5' ss Score
8.72
3' ss Seq
TGGCCTCTCTGGTTATTCAGAGC
3' ss Score
6.71
Exon sequences
Seq C1 exon
ATTGATGATGGCGACTCTGAGGAGGAACAAGAGTCTGCAGAATCTGGAGAGGATGAGGAGGATGGAGATGAATCTGACTTG
Seq A exon
GTAAGCCTGGCTGCCAAATGCAGCTTTCAACCGTTGTCCTGCTGGTGATGATTTCCCCTTTGCACTGCTGCCAGAAGGAGACAGAGAAGCAGTGTAGTTTCAGGACTCTGACAAAACTCACTGGCTGAAGCCACCCATGCAAAGTATGGTTTTCCACAAGGTGCATAACAGTGATACACTTAATTGTTTTCCGATGCTAATTAATGGGCTATTTTTCTTGTTTTCAACAAGGTGTTGATTGCTTTTAATCATTTGAATGTTAGCAGAAATATTTAAGGGTGCTTAAATTCGTTGGGTGCAAATGTGGCAAGTGGTGGGAGCTAGCAGTGTTTTCCTAACAACCTGAAGCTCAGCTTGCCTCCAGAGCGAGTCCAGTTGGAGCTGTTCACAAATCCATTGGGCCAACCCACTGCCTAAATTCACCTCGTCTAACATACCACCTCAGAGGTATGGGCAGCCCTTGTCAGGCATATGTACAAACAGCATACAGAAAGACAGCCACTCTCCCTGGAAGGGTGTCTGGTAGTGCTAAGGCAAGATTTTCACCTGCTGTTTGATGATTTTGACTTCTTACTTTTCAGATGGCTGGTGAAGGGAACTTGAAAATGATTTTTTTATTTTATTTTTTTGAAATTGCTATTCATTGATTGTCTGTGTCTCCCCACACTCCCCTTTACTTTAAAAATGTTGCTCCCTTTTCACAGCATCTCAAGTTGAGGAGCCAGCATTTAAAGCACCCCAATGCTTCAGTCACCTTGAGAAAATTCTTGACTTCATTGTCTCAATGTTTTGAGCTGAAGGTAGAAGCAACTATACCAAATGAATTGTTGAAACTCTGTAGAATCTTGTTCCTTGTTCTCTGACGCTACAAGAGCCAGAGAGAATTAGGCAGGAGGGGCTGTATAGCCTGTGCCTTTCACTGGGCACCTGAGGCACTTTTGTAGTGCTAGATCAAACTAAGGGTTGAGCTTGCAATCAAGTCCAAACAGCCCAGTCATATCTAGACATCCTAGACTGTGATTTTTGCTGTGCTTATACATGGTGATTCAGCCTGGAGGCCAGATGGGGACTGGCTCAGATGCAAACCTCTCACCCACAAGTAGTGTGATGCAACTGGTGGAAGCTACGTGGTAAGGCACAGCCATGCACTTGGGCGCAGTGATTGTTGAGGCAGTGTAGACACCACTGCAGGGCTGCCCGGGGAGCCAGGGCTCAGCACCACCTTGGTCCTGCTGCACACTGTGGTAACAGGGCATGGTATAGCATCAGTTTCCTGTTAAGGTAGGCCACGAGTGTAGGCCCTGATCCAATCTCTGCTGAAGGCAGCAGGAGCTTTTTTATAGGCTTCAGTGAGAGATGGAGTGAGAGAGTTTCAGTTTGAACATGAGTTTTATAGTTGGAGCTTTGAATGCTGAACTGGAGTGCCTGGTTCCCCATTTTAATGTTGACTTTGAAAAGCCACCTGTATTTTCTGCATATTGAACAGGAAGGAAACCCAAACTCTGTTTAGATTCATACATGCCTGAAGATTGCTGTGTGATTAGGTTGTACTGATGTGACACCTTGCTCAGGGAGGGAGCTGGTCTCTGCTGTGCAGTTAAATTCCCCAGGGTCTGTCCCAGCCCCGTTAAACTGACTCTTCAGATACAAAAGATATATTTTTTTTTTAGCACGACTGTGGAGCAATATGAGTATTATAGTTTGAAAAAAGAAATAAAAAAGAAATAAAAGCCACTTTTCTGGGGAGAAGCTAAAAGTGTGTATGCATACTCACCCTGCTGTGCAGAGATGCTCAACTACTCCTGAGATGAGTGTGGTGTTAGAGCCCACATGGAAGAGAAGGTGAAGTGAGCACTGTTGAGATGACAGGAAATACGCCCACACGTGTGCTGGTGTTTCCTTTTCTGCACTATAAAGGCATCTTTGCACCAATTGATTTCAAACCTCAGTCCTTAAGGCCTTTTACACTTCTCAAGCTGTGTGAAGGCTCTTTCATATGAGTGCAAAGGACTGCTGTGATGCTGATACCAACATGCCTTACATGCACATGGCCTCTCTGGTTATTCAG
Seq C2 exon
AGCTCGGAGTCCAGCATCAAGAAGAAGCTGTTGAAGAGGAAAGGAAAGACGGACAGCCCATGGCTGAAACCCACCCGCAAGAGGAGACGGAGGAATAAAAAGAAACAAGCCAATGTGCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008472:ENSGALT00000013807:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.907
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]