DreINT0061790 @ danRer10
Intron Retention
Gene
ENSDARG00000026634 | ehmt1b
Description
euchromatic histone-lysine N-methyltransferase 1b [Source:ZFIN;Acc:ZDB-GENE-080515-3]
Coordinates
chr21:14566892-14567256:-
Coord C1 exon
chr21:14567098-14567256
Coord A exon
chr21:14566961-14567097
Coord C2 exon
chr21:14566892-14566960
Length
137 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGA
5' ss Score
6.71
3' ss Seq
GTACATTTTTCATTCACAAGCCC
3' ss Score
0.63
Exon sequences
Seq C1 exon
CCAAAGGAGATTGTGCGTGTGAATGGAGAGAAAATGGATAATGAGTCTGATGAGGAGGAGTCAGAGGAAGGGGAAGACACAGAGGATGAAGAAGAGCTAGTCACAGAAGATGGAGCCAAAGCTTCACATGAGGAACCTAGGATACCTTCGATCTCACAG
Seq A exon
GTGGGAATTCAGAAGAAATGGAAGTGTTGGTCATTGTGTAATTCACTCCTTTGGATTGCAAATGGCTTGTACACTGAATCTGTATGTTTAAGGTAAAATAGCCTAAAATGTTTATTTGTACATTTTTCATTCACAAG
Seq C2 exon
CCCCTGGAAGAAGAGTCTGAGGAGTCTCAAGACTGTGAAGGTGAAGAGGAAGGGGATGAATCAGACTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000026634:ENSDART00000124223:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAAGGAGATTGTGCGTGTG
R:
AGTCTGATTCATCCCCTTCCTCT
Band lengths:
226-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]