MmuINT0055987 @ mm10
Intron Retention
Gene
ENSMUSG00000036893 | Ehmt1
Description
euchromatic histone methyltransferase 1 [Source:MGI Symbol;Acc:MGI:1924933]
Coordinates
chr2:24858173-24863411:-
Coord C1 exon
chr2:24863223-24863411
Coord A exon
chr2:24858251-24863222
Coord C2 exon
chr2:24858173-24858250
Length
4972 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGAA
5' ss Score
6.33
3' ss Seq
TTTTTCTTTGGCTTGATCAGATG
3' ss Score
7.3
Exon sequences
Seq C1 exon
GGCGAGAAAGCCTTAGATGATAGTGCCCTGCATGTAAATGGCGAGAGCTTGGAGATGGACTCAGAAGATGAAGACTCCGATGAGCTGGAGGATGACGAGGACCATGGAGCTGAGCAAGCGGCTGCATTTCCCACCGAGGATAGTAGGACTTCTAAAGAGAGCATGTCTGAGACTGACCGGGCTGCAAAG
Seq A exon
GTAGAAATCCACTCCCCCAGGTGGTGGCACTAGTGAGCAAAACCACGAAGTCCACTGTAGCTTCTAAGATTCTGGGCACTCTTATGTGCTGCTGATTTTTTTTTTTCTTTTTATTTAACATTTATAAAAAAATTAAGTAGCTGGGCATGGTGGCTTAGGAGGTAGAGGCAGGCAGAGCCCTGAGTTCAAGGCTAGCCTGGTCTATATAGTGAGTTTCATGCCTGCCAGAACTACATAGTAATACCCCATCTCCAAAACATGAAAATGAAGAAAACAATTAAATATCTGTCAGCCGGCAGAAGAACCAAGAAACAAAAGGTAGATCAAAAGCAAATGTAATTAGTGGAAAACAGAATAAAATGGCTAGAGTTAAATCTCATTGAGTCAGTAGTGGTTTTGTTATGTAAACTATTTTTGAAGACTACAGATAGAAAAAGCACTGTTGTGCATTCTGAGACAACATTCCCATAAAATCAATCCCTAATAGTAGTCACATACAGCTGTGTGCTATAACAGTAATGGCCAGAAAAAATTGATCGATTCCTAGGAATTCTTAACTTGACTTACTAAATTAACAAAGAAAAGCCAAAGAGTGTATATACACATAGCCTCCCCAGCCCCATCACTCCCTCCCCCTATCCCCTTCCCACCCTTTCCTCTCTGTGTAGCCCTGGCTGTCTAAGAACTAAGTCACTATGTAGACCAGGTTGGCCTCAAACTCAGAGATATACCTGTCTCTTTCTCCCCAGTGCTGGGATTAAAATCATGCACCACGAATGCCTGGCTTTCAGCTGGCATTTTCAATAATAAGTCAGACATGATGTCATGTACCTATAGTCTCAGATGCTTGGAGGATTGAAGCAGTAGGATTAATAGAGCCTAAGACTTTGAGACTAGTCAGCATTGCATTCCAAGATCCCATCATATAATTAAATAGGCAAGAAATGCCTCTTTCAGCCGGGCAGTGGTGGCACACTCCTTTAATTCCAGCACTTGGGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAAGGCTATACAAAGAAATCCTGTCTTGAAAAACCAAACCAAACCAAACCAAACCAAACCAAACCAAACCAAACCAAAACAGGAAAAAAGAAATGCCTCCTTCTAAGTGCTCAGTTTTTTGTTCTTACATGAGCAGAACCTCACAGTGCATCCTTTTTGTTTATTTTCTTGTTGCTGTATGGCTTGTCTCACCCACTATGTTTAGACTGTTGTTCATTTTTATTCTTGTAGAATTCGGGTGGTCTGGGGATCTCTGAAACTGTTTAAAGAGATGTGTAAGACTGGAACTATCATCGTGTGCTCAGATGTCTGCTTCTTTTGTCCTTAGAGACATACTTGTGTTGCTGTCCTTGCATTGATGACTTAACTCTTCTTCTAATTTGAACATTCTCAACCTGAAAGTACTGGAATAAATGTCAGTAGACAAATGAACAGCAATGCTTCGTAGTTCTTCGAAATCGTTTTAAGAGCGTCTAGGGGTCCTGAGGTGCTGTGCTTGAGTACCACCATGGTGCAGTGTTCCTGTATGGTGTTTTATCCCTATGTAGACAGATGTCCCTTACACTCTCTGTGGCACTGTATCTAAGGCTGTTTGATGTGACAGTCCCACCAATAGCCTATGCATAAGTCATTCCCTGGTGTAAACTGGGAGCAGGTCACTGTGCCTGTTAATCCACAGACACTGCTATGCTGGTGTGAAGAGGATTGCAGGCATTTATAGCTCTGCCACCCGCTTCTGCCCATCTTGCCCATTGCGCTGGTTTGCCAGTCTTGCCACTCTCTCCATTCAGAGAGTACATAGGGTTAGAACATTATAGTTTTAATGCACATTTTCCTGATTTCTAGAAGATTGAAGATGCCTATGTTTGTTTTCCATTTGTATATTGTCTTAGTCACTGTTCTGTTGCTGTGAAGACATGCTATGATTCTGGCATCTCTTATTAAAGCAAGCATTTAATTGGGGCTTACTTAAACTTTCAGAGGGGTTAGCCCACTATCATGGTGGGGAGCATGGTGTCCCTGGTGCTGGCAAAGTAGCTTAGAATTCTATATCTGGATCCATATCTGGTAGCAGGAAGGAGGGAGTCTGGGCCTAGTGTGGGCTTTTGAAATCTCAAAGCCCACCCCCAGTGACAGGCTTCCTCCAACAAGGCCACACCTCCTAATTCTTATAATCCTTTCAAATAGTGCTAATCTCCAGTGACTAAGCATTCAAATCTATGAGCCTGTGGAGGCCATTCTTACTCAAACCACCACAGATGGTCTCTTTTGTGAAGAACCTGATCAAGTATCAGCCGTTTATCTATTAGATATTAAGTTGCCTGTCTTTTCTCATTTTGTAGAAGGTCTTCGATTCTGAAATGATTCCTGTTTATGTAGTCAGCACAAGATCATCTTCTAGTGTGGGCTTGCTGAGTCATAGTAAGATTGGATTGTCATTTAGTTGTGTGGATTGGAAGCTAAATTAGATATACTTGGGCACACTGGCTGTTTAAGTGCCTTAACTCTTTTTTTTTTTTTTTTTAAACTTCTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTATATGGAAGTACACTGTAGCTGTCTTCAGACACTCCAGAAGAGGGAGTCAGATCTCGTTTACGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCTGGACCTTCAGAAGAGCAGTCGGGTGCTCTTACCCACTGAGCCATCTCACCAGCCCAAGTGCCTTAACTCTTAACTGGAAAGCTGGAGGTGCTGTTGTTTCCTGCTGTTTTTATAAGGAGAACAGCTTCCTCTGCCCACTGAGCACAGCTTTTAGCTGCACCACATTTGGTTCCTTACTTCTGGTTTATTCTTTGCCCACTAGTGAGTGCTCTTTTGTTGTTACTGACTGTTTTGTGTGTTTTGTTTGTTTGTTGTTGTTGTTTTGTTTTGTTTTTTGGCAAGGAGGGAGTGTTTGTGGTGAAAGGGTTTCTCTGTGGAGCCTTGCCTGTTCTGGAACTCCTTCTGTAGACCAGGCTGGCCTCTAGTTCATAGAGATCCTTCTGCCTCTGCCGCCTGTGTGCTAGGAATAGAGTTGTGTGCCACCACTGCCTGACAATCAACTAGTACTCTTTTTCTCTCCCTTTCCCTTGGGATTTCAACTTATGTGTTTTCTTCCTTACATGTGTCATATGTGTAATTGTTAAAAGTGATCTATCCATTTCTGTGTATCACCTTTTCTAATTGGTAGTTACATTGTTCAGTCACGTTTAAAATTAAACAAAACAACTGCCCAGTGAATTAGAAGAAAACTTAAAATTAAATAAAACTCACAAAGTACCAGAGTCCTTCAATGAAGGTTATATTTAATGATGAAAATTGAAAGCATTTTGATCATCAGTCATAAAATGAGGGTCAGTTTGCTGCTTTTAGCTTTAACACAGGGAGAATAACATTGACTGTCTTGACTGATGCTATAAGAAAAAAGCCAGAAAAAAAATTTAATATTTAAAAGGAAAGGAGAGAACATAAAAATGCACCTTAAAATCTTGGAAAACCCTAGAAAGTATTACAGCCATTGAGTTACACTTCCATGTGATCAAGACATAGACATCTCTTGTTTCCATGTAAAATTGCAGTAAACACCAGCATGCTTATAAATGCTTAGGCATGTTTTTAAAATGTCAACTAGGAAATTGGTGTGGTGGCACTTAATTTTAATCCCAGCACAGGGAGGCAGAGACTGGGTAATTCTTGGCATCTCCAGAGTACCTAAGATAGGTGACACATTCAACAATAATATGGTGTAAGAGAACAGCAGAAATTTACTAAATTAGGTTAGCAAGGGACCTCCTATTTGTGCAAATAAAAACTGCATTGTTCTAGGTTTATCTCTAAGCTCAGAACAGTTCCATCAAAAGTTAATGAGAACTTTCTATAGAGCTTCAAATTCTGAAGTTAATGGACCAGTGAGATGAAGAACAGTTGTGGGAATTGTGTGAGGGAATGTAGGAGGGAATGTAGGAGTCATTGTCAGTGTTGAGAATGGGCATATTGAGATATGCATAGGGTGTCCAGTGAGTTATCATGGAGAGGGGTACCATCTGACTCAGGAGTGCTGCATCTGTCCTCGCCTGCCTTTATGTTGGCTTGTTTGGAGTGCAGCTTGACTATGAGCCCTACAGGTTCTGTTGAGCTGGGAATATCAGAGAGAAGTAGATTCTCTGGAGTAGATCCTGCAGAGAGTCAGACTACAGCACATCAGAGACCACAGTACTGACTTGTAGCGAGTGGATCTGGGGCAAGTGGACACTATATCTATTCACTGACACTGTAGGTAGAGGTGATAAATACAGTAGAAAAACCAAGGTGTCTTTGCTATTCTGCTATAGAAAGTATCCCAAATCTTGTCTATAGTTAGAAAAGAATAAATTTATTGAAGTATATCCTGTAGGTTTAGGAATAGCCTCAGTGTAGCTGGAAGTGGTCAGGCAACATAGCAGTGATGGCTTCTGGGACTAGACTGTTCTTGGGCGATTAGAGGTAGGTTTGGTTATGTATTTTATAGCTCTTTAGAATCAATCTCTCTCTCTCCCTCTCCCTCTCTCTCTCTGTGTATTACTACTTTTTGCAGACATCTGCCATGTCTTGCATGCATAGTAATCTGCAAGATGCAGTTACTTCATTTGAGTCACCCGAGTGAGTCCATTTGGGATAGAGTATCTTAGTAGGGAGTGTTAGCAGAAACTCTGGTATCTTGTTGTCTGCTTGGAAATTCCCTGGCCAGGGCCATCCAGACAGCTTGTTTCTACCTTGCGGGCAGACAGTGAGGTCCCTTCTATGTATATCTGCAGTGTTTTTTAACATTTGTCTTGTATCCATCTGCTTTCTGCTATAAGATCTAATTGGTTTTTGTTTTTCTTTGGCTTGATCAG
Seq C2 exon
ATGGATGGAGATTCAGAGGAGGAACAGGAGTCTCCCGACACAGGGGAGGATGAAGATGGTGGAGACGAGTCTGACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036893:ENSMUST00000147147:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types