GgaINT0126641 @ galGal3
Intron Retention
Gene
ENSGALG00000008472 | F1P2X9_CHICK
Description
NA
Coordinates
chr17:2452069-2452994:+
Coord C1 exon
chr17:2452069-2452257
Coord A exon
chr17:2452258-2452913
Coord C2 exon
chr17:2452914-2452994
Length
656 bp
Sequences
Splice sites
5' ss Seq
AAGGTATTC
5' ss Score
6.8
3' ss Seq
GGGGCACATGGTGGCTGCAGATT
3' ss Score
1.27
Exon sequences
Seq C1 exon
AGTGAAAAGGAGCTAGGTGATGTCAGCCCTCACGTGAATGGGGAGAGCATAGATGTAGACTCTGAAGAGGAAGACTCTGATGAGTTGGAAGATGAGGACGATCACGGAGCAGAACAGGCAGCTGCATTTCCTGCAGACGATAACAGGACCTCTAAAGACAGCGCGTCTGACGCAGACAATGTCAGAAAG
Seq A exon
GTATTCACATGCCCCGTGCAGGACTTAGAGTGGGATGGGACACTGCTGATCCCTGTCAGACAGGAGTGGAATCAGTTGAGGCAATTCCTAGGAATTTTTTAGCATGCAAGATGGCAGAAAGCTCAGTGGTGGAAGTGAGGCTTTTGATGACCACTTCCTGCTTCCTTTTCCCCTCCCCCATGAGAGTCTCCTCGCCTACCCTCCTGTTTCAGCCTTGCTACATAACTCTCTGTGATCCAATGTATGTGCAGGACTTCCATCACAGTTAGGTATTCACTGCACCAGCAGGAGATGTCTTCCTAATCTTGTTACAGGCTGGTAAAGAATTAAAATTGTTTTAGTTAACTTACCCCAAATCACAATACATATTGTAGGTATGAGGTTGTTTCTTATTAATCACAGAAATTAATGTTTGGTTGGAAAACTTTCTTTGGGAGTTATCCTGTCCCATCCTCATGGGTGAACCATGAAGTACATTAACAGTCTTGGAGTGCCTGTCCTGGAAAGGAGATGGTGTTAGTGCTCACATGGCTGGGGCTGAGTGCAGCTCGGCGATGGGATGCTCTGTAGGGTCAGGCAGGGTGTGGAGGGGTGCCGTGCTCGGAGGGACCTGATGGGACTGACTCTTTCTGTTCTGGGGCACATGGTGGCTGCAG
Seq C2 exon
ATTGATGATGGCGACTCTGAGGAGGAACAAGAGTCTGCAGAATCTGGAGAGGATGAGGAGGATGGAGATGAATCTGACTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008472:ENSGALT00000013807:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGAAAAGGAGCTAGGTGATGT
R:
CAAGTCAGATTCATCTCCATCCTCC
Band lengths:
270-926
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]