RnoEX0031253 @ rn6
Exon Skipping
Gene
ENSRNOG00000007242 | Ehmt1
Description
euchromatic histone lysine methyltransferase 1 [Source:RGD Symbol;Acc:1307588]
Coordinates
chr3:2032324-2037677:-
Coord C1 exon
chr3:2037520-2037677
Coord A exon
chr3:2036883-2037071
Coord C2 exon
chr3:2032324-2032401
Length
189 bp
Sequences
Splice sites
3' ss Seq
TGTGCATTGCTATGTTCCAGGGT
3' ss Score
7.61
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
CTTGCTTGCCTTTTGTTTTAGCAGCTGCAGTGTCTCGGAAGAAAAAACGAAGAATGGGAACCTATAGCTTAGTTCCCAAGAAAAAGACCAAAGTATTAAAGCAGAGGACGGTGATTGAGATGTTTAAAAGCATCACTCATTCCACTGTGGGTGCCAAG
Seq A exon
GGTGAGAAAGTCTTAGATGATAGTGCCCTGCATGTAAATGGCGAGAGCTTGGAGATGGACTCCGAGGAGGAAGACTCTGAGGAGCTGGAGGATGAGGAGGACCGTGGCGCTGAGCAGGCTGCTGCATTTCCCACTGAGGACAGTAGGACTTCTAAAGAGAGCATGTCTGAGACTGATCGTGCTGCAAAG
Seq C2 exon
ATGGATGGAGATTCAGAGGAGGAACAGGAGTCTCCTGACACAGGGGAGGACGAAGACGGTGGAGATGAGTCTGACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007242_MULTIEX2-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.534 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTTGCCTTTTGTTTTAGCAGC
R:
CAGGTCAGACTCATCTCCACC
Band lengths:
234-423
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]