DreEX6014040 @ danRer10
Exon Skipping
Gene
ENSDARG00000095180 | ABR (2 of 2)
Description
active BCR-related [Source:HGNC Symbol;Acc:HGNC:81]
Coordinates
chr5:61952975-61954936:+
Coord C1 exon
chr5:61952975-61953109
Coord A exon
chr5:61953188-61953293
Coord C2 exon
chr5:61954786-61954936
Length
106 bp
Sequences
Splice sites
3' ss Seq
CCTGCTGTTTTTAACCACAGCTT
3' ss Score
7.93
5' ss Seq
GAGGTAACA
5' ss Score
8.1
Exon sequences
Seq C1 exon
ATACCAAAGATATCCTGATGATGTTGAGTGATATGGACATTAATGCCATAGCAGGGACGCTGAAACTGTATTTCAGGGAACTGCCAGAACCTCTTCTCACGGATCGGCTGTACCCGGCCTTCATGGAGGGCATTT
Seq A exon
CTTTATCAGATCCTGCAGCAAAAGAAAACTGCATGATGCATCTGCTGCGCTCGCTGCCAGACCCAAACCTCATCACATTCCTCACCCTGCTGGAACACCTCAAGAG
Seq C2 exon
GGTGGCAGAGAAGGAGCCGATCAACAAGATGTCTCTGCACAATCTGGCCACAGTGTTTGGTCCGACTCTCCTGAGGCCGTCAGAGTCCGAGAGCAGTAAAGCCCAAATCACACTGGCCTCCGACATCTGGTCTCATGATGTCATGGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000095180-'6-6,'6-4,7-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0062022=RhoGAP=FE(29.2=100)
A:
PF0062022=RhoGAP=FE(22.7=100)
C2:
PF0062022=RhoGAP=PD(21.4=64.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGATGATGTTGAGTGATATGGACA
R:
GTCGGAGGCCAGTGTGATTTG
Band lengths:
246-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]