MmuEX0003332 @ mm9
Exon Skipping
Gene
ENSMUSG00000017631 | Abr
Description
active BCR-related gene [Source:MGI Symbol;Acc:MGI:107771]
Coordinates
chr11:76233237-76236684:-
Coord C1 exon
chr11:76236550-76236684
Coord A exon
chr11:76235655-76235760
Coord C2 exon
chr11:76233237-76233384
Length
106 bp
Sequences
Splice sites
3' ss Seq
AGCCCTTTCTCCTCCTGCAGCCC
3' ss Score
10.06
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
ATAACAAGGACATCCTACTGATGCTGAGCGACATGGACATCAACGCCATCGCTGGGACCCTCAAGCTATACTTTCGGGAGCTGCCTGAGCCCCTCCTTACAGATAGACTTTATCCAGCCTTCATGGAGGGCATTG
Seq A exon
CCCTGTCAGACCCTGCTGCCAAGGAGAACTGCATGATGCACCTACTCCGCTCCCTGCCTGACCCCAACCTCATCACCTTCCTTTTCCTGCTGGAACACTTGAAAAG
Seq C2 exon
GGTTGCTGAGAAGGAGCCCATCAACAAGATGTCACTTCACAACCTTGCCACGGTGTTTGGCCCCACGTTACTGAGACCATCAGAAGTGGAGAGCAAAGCACATCTCACATCAGCTGCAGACATCTGGTCCCATGATGTCATGGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000017631-'30-38,'30-37,31-38
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0062022=RhoGAP=FE(29.4=100)
A:
PF0062022=RhoGAP=FE(22.9=100)
C2:
PF0062022=RhoGAP=PD(20.9=64.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGCGACATGGACATCAACG
R:
TCATGGGACCAGATGTCTGCA
Band lengths:
246-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: