RnoEX0005588 @ rn6
Exon Skipping
Gene
ENSRNOG00000056837 | Abr
Description
ABR, RhoGEF and GTPase activating protein [Source:RGD Symbol;Acc:1306279]
Coordinates
chr10:64568091-64571604:-
Coord C1 exon
chr10:64571470-64571604
Coord A exon
chr10:64570645-64570750
Coord C2 exon
chr10:64568091-64568238
Length
106 bp
Sequences
Splice sites
3' ss Seq
AGCCCTTTCTCCTCCTGCAGCCC
3' ss Score
10.06
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
ATAACAAGGATATCCTACTGATGCTGAGTGACATGGACATCAACGCTATTGCTGGTACCCTCAAGCTCTACTTTCGGGAGCTGCCTGAGCCCCTCCTTACAGACCGACTCTACCCAGCCTTCATGGAGGGCATTG
Seq A exon
CCCTGTCAGATCCTGCTGCCAAGGAGAACTGCATGATGCACCTACTCCGTTCCCTGCCCGACCCCAACCTCATCACCTTCCTTTTCCTGCTGGAACACTTGAAAAG
Seq C2 exon
GGTTGCCGAGAAGGAGCCCATCAACAAGATGTCACTTCACAACCTTGCCACAGTGTTTGGCCCCACGTTACTGAGACCCTCAGAAGTGGAGAGCAAAGCACATCTCACATCAGCTGCAGACATCTGGTCCCATGATGTCATGGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056837-'52-47,'52-45,53-47
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0062022=RhoGAP=FE(29.4=100)
A:
PF0062022=RhoGAP=FE(22.9=100)
C2:
PF0062022=RhoGAP=PD(20.9=64.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGACATGGACATCAACGCT
R:
TCATGGGACCAGATGTCTGCA
Band lengths:
244-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]