BtaEX6074124 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020566 | BCR
Description
breakpoint cluster region [Source:HGNC Symbol;Acc:HGNC:1014]
Coordinates
chr17:73695570-73696980:-
Coord C1 exon
chr17:73696846-73696980
Coord A exon
chr17:73696060-73696165
Coord C2 exon
chr17:73695570-73695734
Length
106 bp
Sequences
Splice sites
3' ss Seq
CCGCCCCCCGCCCCCCGCAGCGC
3' ss Score
9.74
5' ss Seq
AAGGTAGCC
5' ss Score
7.58
Exon sequences
Seq C1 exon
ACAACAAGGACGTGTCGGTGATGATGAGCGAGATGGACGTGAACGCCATCGCCGGGACGCTCAAGCTCTACTTCCGCGAGCTGCCCGAGCCCCTCTTCACCGACGAGTTCTACCCCAACTTCGCCGAGGGCATCG
Seq A exon
CGCTCTCGGACCCCGTGGCGAAGGAGAGCTGCATGCTTAACCTGCTGCTGTCACTGCCGGAAGCCAATCTGCTCACCTTCCTCTTCCTCCTGGAACACCTGAAAAG
Seq C2 exon
GGTGGCGGAAAAGGAGACGGTGAATAAGATGTCCCTGCACAACCTCGCCACGGTGTTCGGCCCCACGCTGCTCCGGCCCTCGGAGAAGGAGAACAAGCCGCCCGCCAACCCCAGCCAGGCCATCTCCATGACCGACAGCTGGTCCCTGGAGGTCATGTCCCAGGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020566-'31-35,'31-33,32-35=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.214
Domain overlap (PFAM):
C1:
PF0062022=RhoGAP=FE(29.4=100)
A:
PF0062022=RhoGAP=FE(22.9=100)
C2:
PF0062022=RhoGAP=PD(20.9=57.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATGAGCGAGATGGACGTGA
R:
CAGCTGTCGGTCATGGAGATG
Band lengths:
255-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]