RnoEX0014498 @ rn6
Exon Skipping
Gene
ENSRNOG00000001304 | Bcr
Description
BCR, RhoGEF and GTPase activating protein [Source:RGD Symbol;Acc:1307993]
Coordinates
chr20:14422146-14423763:-
Coord C1 exon
chr20:14423629-14423763
Coord A exon
chr20:14422624-14422729
Coord C2 exon
chr20:14422146-14422308
Length
106 bp
Sequences
Splice sites
3' ss Seq
TAAATGCCCTCCTTCTGTAGCTC
3' ss Score
7.93
5' ss Seq
AAGGTAGCG
5' ss Score
6.91
Exon sequences
Seq C1 exon
ATAACAAGGACGTGTCCGTGATGATGAGCGAGATGGACGTGAACGCCATTGCTGGCACGTTGAAGCTCTACTTCCGAGAGCTGCCCGAGCCCCTCTTCACGGATGAGTTCTACCCTAACTTCGCAGAAGGCATTG
Seq A exon
CTCTTTCAGACCCCGTCGCAAAGGAAAGCTGCATGCTCAACCTGCTGCTGTCCCTCCCAGAAGCCAACCTCCTGACCTTCCTCTTCCTTCTGGACCACTTGAAAAG
Seq C2 exon
GGTAGCTGAAAAGGAGACGGTGAACAAGATGTCCCTGCACAACCTCGCCACGGTCTTCGGCCCCACGCTGCTTCGGCCCTCGGAGAAGGAGAGCAAGCTCCCTGCTAACCCCAGCCAGCCCATCACCATGACTGACAGCTGGTCCCTAGAGGTCATGTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001304_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.182
Domain overlap (PFAM):
C1:
PF0062022=RhoGAP=FE(29.4=100)
A:
PF0062022=RhoGAP=FE(22.9=100)
C2:
PF0062022=RhoGAP=PD(20.9=58.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGTGATGATGAGCGAGATGG
R:
GTCAGTCATGGTGATGGGCTG
Band lengths:
256-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]