DreEX6050514 @ danRer10
Exon Skipping
Gene
ENSDARG00000042329 | BCR (1 of 2)
Description
breakpoint cluster region [Source:HGNC Symbol;Acc:HGNC:1014]
Coordinates
chr8:30581497-30582867:+
Coord C1 exon
chr8:30581497-30581631
Coord A exon
chr8:30581725-30581830
Coord C2 exon
chr8:30582705-30582867
Length
106 bp
Sequences
Splice sites
3' ss Seq
GCGTTTTTCATTTCCTTCAGCTT
3' ss Score
9.51
5' ss Seq
GAGGTACAG
5' ss Score
6.62
Exon sequences
Seq C1 exon
ACAACAAAGATGTTTCAGTTATTATGAGTGAGATGGACGTGAATGCCATTGCTGGAACACTGAAGCTTTATTTCAGAGAGCTTCCCGAGCCCCTCTTCACTGATGAACTCTACATTAACTTCACTGAAGGCATCG
Seq A exon
CTTTGTCAGACAGCGTGGCAAAGGAAAGCTGCATGCTCAACTTGTTGCTCTCCCTTCCTGAACCCAACCTGCTGACCTTCCTGTTTCTGCTGGACCATCTGAAGAG
Seq C2 exon
GGTGGCTGAGAACGAGATTGTCAACAAGATGTCCTTCCACAATCTGGCTACAGTGTTCGGCCCGACCCTTCTCCGCCCCTCTGAGAAGGACAGTAAAATACCAAGCAATCCCACGCAGCCCATCTCTATGAGTGACAGCTGGTCTCTTGAGGTTATGTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000042329-'25-25,'25-24,26-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.164
Domain overlap (PFAM):
C1:
PF0062022=RhoGAP=FE(29.2=100)
A:
PF0062022=RhoGAP=FE(22.7=100)
C2:
PF0062022=RhoGAP=PD(21.4=60.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGAGATGGACGTGAATGCC
R:
ACTCATAGAGATGGGCTGCGT
Band lengths:
242-348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]