GgaEX1010753 @ galGal4
Exon Skipping
Gene
ENSGALG00000006695 | BCR
Description
breakpoint cluster region [Source:HGNC Symbol;Acc:HGNC:1014]
Coordinates
chr15:8581621-8583632:-
Coord C1 exon
chr15:8583498-8583632
Coord A exon
chr15:8582785-8582890
Coord C2 exon
chr15:8581621-8581783
Length
106 bp
Sequences
Splice sites
3' ss Seq
TATTATTTTTTGTCTTGTAGCAC
3' ss Score
9.17
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
ATAACAAAGATGTGTCAGTGATGATGAGCGAGATGGATGTTAATGCTATTGCGGGCACATTGAAGCTCTACTTCCGAGAGCTGCCTGAACCTCTCTTTACAGATGAACTGTACCCCAACTTTGCAGAGGGCATTG
Seq A exon
CACTTTCAGATCCCGTTGCAAAGGAAAGCTGTATGTTGAATCTGTTGTTATCACTTCCAGAACCCAACCTTGTCACATTCCTTTTCCTTCTGGACCATCTAAAAAG
Seq C2 exon
GGTTGCTGAGAGGGAGAGCATTAACAAGATGTCACTGCATAATCTCGCAACTGTTTTTGGACCAACGCTGCTCAGACCTTCAGAGAAGGACAGTAAAATCCCTGCCAACCCAACCCAGCCTATAACAATGACTGATAGCTGGTCACTAGAAGTCATGTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006695-'44-35,'44-33,45-35
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.182
Domain overlap (PFAM):
C1:
PF0062022=RhoGAP=FE(29.2=100)
A:
PF0062022=RhoGAP=FE(22.7=100)
C2:
PF0062022=RhoGAP=PD(21.4=60.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCTATTGCGGGCACATTGA
R:
TGGGACATGACTTCTAGTGACCA
Band lengths:
255-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]