DreEX6083896 @ danRer10
Exon Skipping
Gene
ENSDARG00000079286 | bcr
Description
breakpoint cluster region [Source:ZFIN;Acc:ZDB-GENE-040724-43]
Coordinates
chr21:17219085-17220050:+
Coord C1 exon
chr21:17219085-17219219
Coord A exon
chr21:17219306-17219411
Coord C2 exon
chr21:17219888-17220050
Length
106 bp
Sequences
Splice sites
3' ss Seq
TTATTATGCTCCTTCTGTAGCTC
3' ss Score
8.3
5' ss Seq
GAGGTAGAC
5' ss Score
5.41
Exon sequences
Seq C1 exon
ATAATAAAGATGTGTCGGTAATGATGAGTGAGATGGATGTGAACGCCATCGCCGGGACGCTGAAACTGTACTTCAGAGAGCTTCCTGAGCCCCTCTTCACTGATGAGCTCTACCCTAACTTTGCAGGGGGCATTG
Seq A exon
CTCTTTCGGACAGTGTAGCTAAAGAAAGCTGCATGCTCAATCTGCTGCTGTCTCTACCAGAGCCTAACCTGGTCACCTTCCTCTTCCTGCTGGATCATCTCAAGAG
Seq C2 exon
GATTGCGGAGAAGGAGTGTGTAAACAAGATGTCTCTTCACAATCTGGCCACAGTGTTTGGGCCGACACTGTTACGACCTGCTGAGAAGGACAGCAAGATCCCCACCAACCCCACACAGCCTATCACGATGGGAGACAGCTGGTCTCTGGAAGTCATGTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079286-'28-27,'28-26,29-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.182
Domain overlap (PFAM):
C1:
PF0062022=RhoGAP=FE(29.2=100)
A:
PF0062022=RhoGAP=FE(22.7=100)
C2:
PF0062022=RhoGAP=PD(21.4=60.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGAGATGGATGTGAACGCC
R:
TCCCATCGTGATAGGCTGTGT
Band lengths:
242-348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]