GgaEX1010753 @ galGal3
Exon Skipping
Gene
ENSGALG00000006695 | BCR
Description
NA
Coordinates
chr15:8837278-8839289:-
Coord C1 exon
chr15:8839155-8839289
Coord A exon
chr15:8838442-8838547
Coord C2 exon
chr15:8837278-8837440
Length
106 bp
Sequences
Splice sites
3' ss Seq
TATTATTTTTTGTCTTGTAGCAC
3' ss Score
9.17
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
ATAACAAAGATGTGTCAGTGATGATGAGCGAGATGGATGTTAATGCTATTGCGGGCACATTGAAGCTCTACTTCCGAGAGCTGCCTGAACCTCTCTTTACAGATGAACTGTACCCCAACTTTGCAGAGGGCATTG
Seq A exon
CACTTTCAGATCCCGTTGCAAAGGAAAGCTGTATGTTGAATCTGTTGTTATCACTTCCAGAACCCAACCTTGTCACATTCCTTTTCCTTCTGGACCATCTAAAAAG
Seq C2 exon
GGTTGCTGAGAGGGAGAGCATTAACAAGATGTCACTGCATAATCTCGCAACTGTTTTTGGACCAACGCTGCTCAGACCTTCAGAGAAGGACAGTAAAATCCCTGCCAACCCAACCCAGCCTATAACAATGACTGATAGCTGGTCACTAGAAGTCATGTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006695-'24-31,'24-29,25-31=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.182
Domain overlap (PFAM):
C1:
PF0062022=RhoGAP=FE(29.2=100)
A:
PF0062022=RhoGAP=FE(22.7=100)
C2:
PF0062022=RhoGAP=PD(21.4=60.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCTATTGCGGGCACATTGA
R:
TGGGACATGACTTCTAGTGACCA
Band lengths:
255-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]