GgaEX1005757 @ galGal4
Exon Skipping
Gene
ENSGALG00000004364 | ABR
Description
active BCR-related [Source:HGNC Symbol;Acc:HGNC:81]
Coordinates
chr19:6337556-6339034:+
Coord C1 exon
chr19:6337556-6337690
Coord A exon
chr19:6337797-6337902
Coord C2 exon
chr19:6338887-6339034
Length
106 bp
Sequences
Splice sites
3' ss Seq
CTCTCTCTCCTTGCCCCCAGCCC
3' ss Score
10.72
5' ss Seq
AAGGTAACA
5' ss Score
8.92
Exon sequences
Seq C1 exon
ATAACAAGGACATCCTGGTGATGCTGAGTGACATGGACATCAACGCCATCGCCGGCACGCTCAAGCTGTATTTCCGGGAGCTGCCTGAGCCCCTCCTCACTGACAGACTGTACCCTGCCTTTATGGAGGGCATCG
Seq A exon
CCCTCTCGGATCCTGCTGCCAAGGAGAACTGCATGATGCACCTTCTCCGCTCACTGCCCGACCCCAACCTCATCACTTTCCTCTTCCTGCTGGAGCACTTGAAAAG
Seq C2 exon
GGTAGCGGAAAAGGAGCCCATCAACAAAATGTCCCTCCACAATCTGGCCACAGTCTTCGGGCCAACACTGCTGAGACCTTCAGAAGGGGAGAGCAAAGGACACCTCACCCTGGCATCCGACATCTGGTCCCACGATGTGATGGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004364-'31-29,'31-28,32-29
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0062022=RhoGAP=FE(29.4=100)
A:
PF0062022=RhoGAP=FE(22.9=100)
C2:
PF0062022=RhoGAP=PD(20.9=64.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGACATGGACATCAACGCC
R:
TCACATCGTGGGACCAGATGT
Band lengths:
249-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]