DreEX6015594 @ danRer10
Exon Skipping
Gene
ENSDARG00000076052 | sez6l2
Description
seizure related 6 homolog (mouse)-like 2 [Source:ZFIN;Acc:ZDB-GENE-091204-189]
Coordinates
chr3:15108821-15112650:-
Coord C1 exon
chr3:15112429-15112650
Coord A exon
chr3:15109199-15109335
Coord C2 exon
chr3:15108821-15109013
Length
137 bp
Sequences
Splice sites
3' ss Seq
TCAACAAACTGTTTCTTCAGTTC
3' ss Score
5.93
5' ss Seq
CAGGTGGGA
5' ss Score
6.71
Exon sequences
Seq C1 exon
GTACAACTACTAACCCGACCCAGGCCGTCCCGTCTATTAAAGAATCAGAGCCTGCCTCCACAGTGATGTCACCAGGAATACTCACCACTGCAGTGACATCATCGGCTGTGCCTCAAGCAGGCCAATTAGGCTTTGGGGGAGCCGTGACATCACTGCCAGCTGAAGAAGAGACCACAACCACTCTAATCACTACAACAACTATAACAACAGTGCACACACCAG
Seq A exon
TTCAGTGCAATGCCAGTCTGTCAGGAATGGAGGGAATAATCGAGTCTCCTGATCCGCTCTCATCCTCGTCTGCCTTTTCCCCACTGGAGTGCACCTACAGCATCACCGTCTATCCTGGATATGGCGTTGAGATACAG
Seq C2 exon
GTGAAGAAAGTAAACTTGTCCAAAGAGGAGTCCCTCACCATTTCGGATCTGGGTGGTGCAGCACTTGAGGTTTTGGCCAATGAGACGCTGATGAGCGAAGGTCAGGTGATTCGTAGCACAACCAATCAAGTGCAGATCCATTATAAGAGCCTGAAGCAAAACAATCATGGCGTTTTCAGCTTTCACTATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000076052-'7-5,'7-4,8-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.587 A=0.087 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0043115=CUB=PU(40.2=93.5)
C2:
PF0043115=CUB=PD(57.9=95.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCCTCCACAGTGATGTCAC
R:
TTGGCCAAAACCTCAAGTGCT
Band lengths:
251-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]