RnoEX0079976 @ rn6
Exon Skipping
Gene
ENSRNOG00000027098 | Sez6l2
Description
seizure related 6 homolog like 2 [Source:RGD Symbol;Acc:1565281]
Coordinates
chr1:198385812-198386955:+
Coord C1 exon
chr1:198385812-198386111
Coord A exon
chr1:198386422-198386561
Coord C2 exon
chr1:198386754-198386955
Length
140 bp
Sequences
Splice sites
3' ss Seq
AGCCACTTACGTCTCTTTAGTTC
3' ss Score
4.61
5' ss Seq
CAGGTACTT
5' ss Score
8.17
Exon sequences
Seq C1 exon
GATCTGACCCAGACCCCACACTAGCCACCCCTCCAGCCGGCCAGACTCTTGCAGCACCCTCCCTGCCACGTGCCACTGAGCCGGGGACAGGGCCTCTGACGACAGCTGTCACCCCTAAAGGGGTCAGAGGGTCAGGCCCCACCGCACCAGAGCTGCTGACCCCACCCCCTGGAACTACAGCCCCGCCCCCACCTGGCCCCGCCTCCCCGGTCCCACCCCTCAGGCCCGAGGGAGGAGAGGAAGAAACCACCACCACCATCATCACCACAACAACTGTTACCACTACTGTCACCAGCCCAG
Seq A exon
TTCTGTGCAATAACAACATCTCCGAGGGCGAAGGGTTTGTGGAATCTCCAGACTTGGGGAGCACTGCCAGCCGCTCTGTGGAGCTCCTAGATTGCACCTACAGCATCCACGTCTACCCTGGTTATGGCATTGAGATTCAG
Seq C2 exon
GTGCAGACACTCAACCTCTCTCAGGAGGAGGAGCTCCTGGTGCTGGCTGGTGGGGGCTCTCCAGGCCTGGCCCCCAGACTCCTGGCTAATTCCTCCATGCTGGGAGAAGGACAAGTGCTTCGGAGTCCAACAAACCGGCTGCTCCTGCATTTCCAGAGTCCTCGAGTCCCAAGGGGCAATGGCTTCAGGATTCACTATCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027098-'7-11,'7-10,8-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.990 A=0.468 C2=0.074
Domain overlap (PFAM):
C1:
NO
A:
PF0043115=CUB=PU(39.6=93.6)
C2:
PF0043115=CUB=PD(58.6=95.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGAAGAAACCACCACCACC
R:
TGAATCCTGAAGCCATTGCCC
Band lengths:
258-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]