BtaEX6109676 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000007955 | SEZ6L2
Description
Bos taurus seizure related 6 homolog (mouse)-like 2 (SEZ6L2), mRNA. [Source:RefSeq mRNA;Acc:NM_001045927]
Coordinates
chr25:26622114-26623355:+
Coord C1 exon
chr25:26622114-26622413
Coord A exon
chr25:26622756-26622895
Coord C2 exon
chr25:26623154-26623355
Length
140 bp
Sequences
Splice sites
3' ss Seq
CGGCGCTTCTGTCTCTTTAGTTC
3' ss Score
8.15
5' ss Seq
CAGGTAACT
5' ss Score
8.63
Exon sequences
Seq C1 exon
GATCTGATCCAGACCCCACACTAGCAACCCCTCCAGTCGGCCAGACTATTGCAGCACCCTTTCTGCCTCGGGCCACTGAGCCGGGCACAGGGCCTCTGACAACCGCCGTAACCCCTAAAGGGGGTAGGGGGGCAGGCCCCACCGCGCCAGAGCTGCTGACCCCGCCCCCAGGAACCACAGCCCCGCCCCTTCCCGGTCCCGCCTCCCCAGGCCCACCCCTGGGGCCCGAGGGAGGAGAAGAGGAGACAACGACCACCATTATCACCACGACAACTGTCACCACAACAGTGACCAGCCCAG
Seq A exon
TTCTGTGTAATAACAACATCTCCGAAGGCGAAGGGCACGTTGAATCCCCAGATTTAGGGAGCTCAACCAGCCGCACCTTGGGGCTCCTGGACTGCACGTACAGTATCCATGTCTACCCTGGCTACGGCATTGAGATCCAG
Seq C2 exon
GTGCAGATGCTGAACCTGTCTCGGGAGGAGGAACTTCTGGTGCTGGCTGGTGGGGGGTCTCCAGGTCTGGCCCCCCGACTCCTGGCTAACTCCTCCATGCTGGGTGAAGGACAGGTCCTTCGGAGTCCCACCAACCGGCTGCTCCTGCACTTTCAGAGCCCACGGGTCCCCAGGGGTGCTGGCTTCAGGATCCACTATCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007955-'3-4,'3-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.990 A=0.511 C2=0.088
Domain overlap (PFAM):
C1:
NO
A:
PF0043115=CUB=PU(39.6=93.6)
C2:
PF0043115=CUB=PD(58.6=95.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGACCACCATTATCACCACG
R:
TAGTGGATCCTGAAGCCAGCA
Band lengths:
249-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]