DreEX6015829 @ danRer10
Exon Skipping
Gene
ENSDARG00000062565 | kcnh4a
Description
potassium voltage-gated channel, subfamily H (eag-related), member 4a [Source:ZFIN;Acc:ZDB-GENE-131125-34]
Coordinates
chr3:17430662-17434407:+
Coord C1 exon
chr3:17430662-17430816
Coord A exon
chr3:17432280-17432487
Coord C2 exon
chr3:17434213-17434407
Length
208 bp
Sequences
Splice sites
3' ss Seq
TGTGTGTGTTTATTTTTCAGACA
3' ss Score
10.54
5' ss Seq
TCGGTGAGG
5' ss Score
8.99
Exon sequences
Seq C1 exon
ATATTATACTGAATTTCCGAACCACTTATGTTGGCCCTGCGGGTCAGGTGGTTTATGATACTCGCTCGATTTGTTTGCACTACTGTACTACCTGGTTCATCCTGGACCTCATCGCTGCTCTGCCCTTTGACCTGCTCTATTTATTCAACATCTCA
Seq A exon
ACATCACTGGTGCACTTATTAAAGACGGTGCGTTTGCTGCGTCTCCTGCGTCTGCTGCAGAAGCTGGATGGCTATTCTCAGTACAGCGCTGTGGTCCTGACCCTGCTGATGTCCGTGTTTGCCCTCCTGGCACACTGGTTGGCATGTGTCTGGTATGTCATTGGACGCCAAGAGCTTGCCAGCAACGACCCCCTGACCTGGGATATCG
Seq C2 exon
GCTGGCTGCAGGAGCTGGGCAAGCGTCTGGAGACTCCATACACGAATGGTACAGTTGGCGGGCCGTCTCTGCGCAGCGCCTACATCGCTTCGCTCTACTTCACATTGAGCAGTCTGACTAGCGTCGGCTTCGGAAACGTCTGTGCCAACACAGATGCCGAGAAGATCTTCTCCATCTGCACCATGCTCATCGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062565-'5-7,'5-6,7-7=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(24.4=100),PF068148=Lung_7-TM_R=PU(25.0=48.1)
A:
PF0052026=Ion_trans=FE(33.0=100),PF068148=Lung_7-TM_R=FE(69.0=100)
C2:
PF0052026=Ion_trans=FE(31.1=100),PF068148=Lung_7-TM_R=PD(4.0=6.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AACCACTTATGTTGGCCCTGC
R:
TCTTCTCGGCATCTGTGTTGG
Band lengths:
301-509
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]