RnoEX0046036 @ rn6
Exon Skipping
Gene
ENSRNOG00000018790 | Kcnh4
Description
potassium voltage-gated channel subfamily H member 4 [Source:RGD Symbol;Acc:621415]
Coordinates
chr10:88657273-88662961:-
Coord C1 exon
chr10:88662804-88662961
Coord A exon
chr10:88659569-88659720
Coord C2 exon
chr10:88657273-88657467
Length
152 bp
Sequences
Splice sites
3' ss Seq
CCCCCGCTGCCCTCCTGCAGACC
3' ss Score
11.26
5' ss Seq
CTGGTATGT
5' ss Score
8.14
Exon sequences
Seq C1 exon
ACATCATCTTGAACTTCCGCACCACCTACGTGTCCCAGTCGGGCCAGGTGGTTTCTGCTCCTCGGTCCATTGGCCTCCACTACCTGGCCACCTGGTTCTTCGTGGACCTCATTGCTGCTTTGCCCTTTGACCTGCTGTATGTCTTCAACATCACTGTG
Seq A exon
ACCTCGCTGGTACATCTGCTGAAAACCGTGCGGCTCCTGCGGTTGCTGAGGCTGCTGCAGAAGCTAGAGCGGTACTCTCAGTGCAGCGCGGTGGTGCTCACGCTGCTCATGTCCGTCTTTGCACTCCTTGCCCACTGGATGGCCTGCGTCTG
Seq C2 exon
GTTGGTTGCATGAGCTGGGTAAGCGGCTGGAGGAGCCTTATGTCAATGGCTCGGCCGGTGGACCATCTCGGCGCAGTGCCTACATCGCCGCGCTGTACTTCACGCTGAGCAGCCTCACCAGTGTAGGCTTCGGCAACGTTTGTGCCAACACTGACGCTGAGAAGATCTTCTCCATCTGCACGATGCTCATAGGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018790-'8-8,'8-7,9-8
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(24.8=100)
A:
PF0052026=Ion_trans=FE(32.9=100)
C2:
PF0052026=Ion_trans=FE(31.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCATTGGCCTCCACTACCTG
R:
TCTTCTCAGCGTCAGTGTTGG
Band lengths:
258-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]