GgaEX6027538 @ galGal3
Exon Skipping
Gene
ENSGALG00000003354 | KCNH4
Description
NA
Coordinates
chr27:4504069-4504938:-
Coord C1 exon
chr27:4504781-4504938
Coord A exon
chr27:4504387-4504594
Coord C2 exon
chr27:4504069-4504263
Length
208 bp
Sequences
Splice sites
3' ss Seq
CCCTCCTGCCTGCCCCTCAGACC
3' ss Score
9.43
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
Exon sequences
Seq C1 exon
ACATCATCCTGAATTTCCGGACGACGTATGTGAGCCACTCAGGCCAGGTGGTGTATGAGCCCCACTCCATCTGCATCCATTACGTGGCCACCTGGTTCTTCGTGGACCTGATTGCCGCGCTGCCCTTCGACCTGCTCTACATCTTCAACGTGACTGTG
Seq A exon
ACCTCGCTGGTGCATTTGCTGAAGACGGTGCGCCTGCTGCGGCTGCTGCGGCTGCTGCAGAAGTTGGACCGCTACTCGCAGTACAGTGCCATGGTGCTGACGCTGCTCATGTCTGTGTTCGCACTGCTGGCCCACTGGATGGCGTGCATCTGGTACGTCATCGGCCGCAAGGAGATGGAGAGCAACGACCCGCTGACCTGGGACATCG
Seq C2 exon
GCTGGCTGCACGAGCTGGGCAAGAGGCTGGAGGCTCCCTACATCAACAACTCAGTGGGGGGGCCCTCCATCCGCAGCGCCTACATCGCCTCCCTCTACTTCACCCTCAGCAGCCTGACCAGCGTGGGCTTCGGCAACGTCTGCGCCAACACTGATGCCGAGAAGATCTTCTCCATCTGCACCATGCTCATTGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003354-'6-8,'6-7,7-8=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(24.8=100)
A:
PF0052026=Ion_trans=FE(32.9=100)
C2:
PF0052026=Ion_trans=FE(31.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CGACGTATGTGAGCCACTCAG
R:
TCTTCTCGGCATCAGTGTTGG
Band lengths:
302-510
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]