DreEX6017813 @ danRer10
Exon Skipping
Gene
ENSDARG00000101043 | ppl
Description
periplakin [Source:ZFIN;Acc:ZDB-GENE-041008-196]
Coordinates
chr3:36324394-36325220:-
Coord C1 exon
chr3:36325042-36325220
Coord A exon
chr3:36324682-36324820
Coord C2 exon
chr3:36324394-36324587
Length
139 bp
Sequences
Splice sites
3' ss Seq
AATCCTGCTTTGTTTTGTAGACT
3' ss Score
8.33
5' ss Seq
GCGGTAAGC
5' ss Score
8.99
Exon sequences
Seq C1 exon
GACATTACTTCTGCTGTCAATAAGATAGAGCCAGAAAAGTCTGCAAAAGTAAAGGAGGCTGAGGCTTTCCTTAAATCCTCCCCGAAATGCGCAAGTGCCCCACAGCTCTACTCCAAGGTGGATGATACTAACAAGAAATACAACAAAGTTGATTTGCTGCTGAAATGTTCAACTGACAA
Seq A exon
ACTGCAGAACTCCTATCAGCTGGAGAACTCACTGCAGAATGGCAAAACTCTGCTGTCCACTTATGAAAACAAACTGGCAAGAGAAGAGACTGCCCCATCTGACCCCGCTTCAATAGAGAAGACCCAGCGCGAGTTGGCG
Seq C2 exon
GACATCGCGTCTGAGCTGAGAAGCAAAAGATCTATCATCACACAGACTGAGCAGAACCTGAGAGACGCTAAAACCAGCTGCAGTAACATGACCAATAAAGTGCAAGAGCACTGTCCTGATATCGAGAGGCAAGAGGCGGAGGTTCAGAAAATGACCAAACGCTTTGACAACCTGAACCGACAGACAGAAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101043-'21-21,'21-20,22-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.400 A=0.809 C2=0.877
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAATCCTCCCCGAAATGCGC
R:
CGCCTCTTGCCTCTCGATATC
Band lengths:
246-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]