RnoEX6046162 @ rn6
Exon Skipping
Gene
ENSRNOG00000002930 | Ppl
Description
periplakin [Source:RGD Symbol;Acc:1305511]
Coordinates
chr10:10679285-10680726:+
Coord C1 exon
chr10:10679285-10679463
Coord A exon
chr10:10679555-10679693
Coord C2 exon
chr10:10680533-10680726
Length
139 bp
Sequences
Splice sites
3' ss Seq
ATGTTGCCCGGTGTTCTTAGGGT
3' ss Score
8.11
5' ss Seq
GAGGTAAAC
5' ss Score
7.2
Exon sequences
Seq C1 exon
AACATTACCAATGAGCTGCTACAGATTGAGCCAGAGAAGATACAGCGCACAGCTGAGTGTGAGGCCTTCGTGCAGGCCCTCCCGGGCAGTGGCACCACACCCTTGCTGAAGACCCGGGTGGAAGATACCAACCAGAAATATAAGCGACTGGTACAGCTGCTAGAAGCAGCCCAGGAGAA
Seq A exon
GGTGGATGTTGCCAACCGCCTGGAGAACAGTCTGCAACGGGGCAGGGAGCTGCTGGCCTCCCACGAGAACAGGCTGATGCAGGATGACACAATACCTGAAAGTGACTACATGTTGGACAGCAAGAGGCAGGAGCTAGAG
Seq C2 exon
GCCATGGCTTCTGAGCTGCAGGCCCAGAAGTCCCTCCTGGGTGAGGTGGAACAGAACCTGCAGGTGGCCAAGCAGTGCTCCAGCTCACTGGCCAGCCGCTTCCAAGAGCACTGCCCTGACCTGGAGCGCCAGGAGGCTGAGGTACACAAGCTCAACCAGCGTTTCAACAACCTCAATCAGCAGGTGGAACGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002930-'17-16,'17-14,18-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.250 A=0.745 C2=0.415
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCACACCCTTGCTGAAGAC
R:
TGAAACGCTGGTTGAGCTTGT
Band lengths:
253-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]