GgaEX1045504 @ galGal4
Exon Skipping
Gene
ENSGALG00000002201 | PPL
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NV96]
Coordinates
chr14:13260696-13261650:-
Coord C1 exon
chr14:13261472-13261650
Coord A exon
chr14:13261182-13261320
Coord C2 exon
chr14:13260696-13260889
Length
139 bp
Sequences
Splice sites
3' ss Seq
TTCCCCTCGCATCCATACAGAGT
3' ss Score
6.49
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
AACATAACCAATGAAGTGCGTCGCATCGAACCAGAGAAAGTGAGGAAGATCCAGGACTGCGAGGCCTTCATTGAGTCCGTGCCCAACACTGGCAGTGCCACACTGGTGAAGAACAAGGTGGAGAACACCAACAAGAAGTACGACCGCGTGGTTCAGCTGCTCAGTGCTGCCCAGGAGAA
Seq A exon
AGTTGAGGTGGCCACGCACCTTGAGAAGAGCCTCCAGCAAGGCCGAGATCTGCTGTCCTCATATGAGAACAAACTGGTCACAGACGACACCGTGCCGGAGGACTTGCGGGTGATAGACCGTAAGAAAGAAGAGCTGCTG
Seq C2 exon
GCCATGGGCTCTGAGCTCCAATCCAAAAGGTTCTTGCTCAATGAGGCGGAGCAGAACTTGCTGAGGACCAAGACCTGCTCCAACACCCTGGCCAGCAAGTTCCAGGAGCACTGCCCTGACATTGAGCGGCAGGAAGCCGAGCTCTACAAGCTCAACCAGCGCTTCAACAACCTCAGCAAGCAAATTGACCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002201-'18-20,'18-19,19-20
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.217 A=0.106 C2=0.031
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAACCAATGAAGTGCGTCGCA
R:
AGGTCTTGGTCCTCAGCAAGT
Band lengths:
251-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]