GgaEX1045504 @ galGal3
Exon Skipping
Gene
ENSGALG00000002201 | Q6PVZ7_CHICK
Description
NA
Coordinates
chr14:14027327-14028281:-
Coord C1 exon
chr14:14028103-14028281
Coord A exon
chr14:14027813-14027951
Coord C2 exon
chr14:14027327-14027520
Length
139 bp
Sequences
Splice sites
3' ss Seq
TTCCCCTCGCATCCATACAGAGT
3' ss Score
6.49
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
AACATAACCAATGAAGTGCGTCGCATCGAACCAGAGAAAGTGAGGAAGATCCAGGACTGCGAGGCCTTCATTGAGTCCGTGCCCAACACTGGCAGTGCCACACTGGTGAAGAACAAGGTGGAGAACACCAACAAGAAGTACGACCGCGTGGTTCAGCTGCTCAGTGCTGCCCAGGAGAA
Seq A exon
AGTTGAGGTGGCCACGCACCTTGAGAAGAGCCTCCAGCAAGGCCGAGATCTGCTGTCCTCATATGAGAACAAACTGGTCACAGACGACACCGTGCCGGAGGACTTGCGGGTGATAGACCGTAAGAAAGAAGAGCTGCTG
Seq C2 exon
GCCATGGGCTCTGAGCTCCAATCCAAAAGGTTCTTGCTCAATGAGGCGGAGCAGAACTTGCTGAGGACCAAGACCTGCTCCAACACCCTGGCCAGCAAGTTCCAGGAGCACTGCCCTGACATTGAGCGGCAGGAAGCCGAGCTCTACAAGCTCAACCAGCGCTTCAACAACCTCAGCAAGCAAATTGACCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002201-'16-16,'16-15,17-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.217 A=0.106 C2=0.031
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAACCAATGAAGTGCGTCGCA
R:
AGGTCTTGGTCCTCAGCAAGT
Band lengths:
251-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]