DreEX6017815 @ danRer10
Exon Skipping
Gene
ENSDARG00000101043 | ppl
Description
periplakin [Source:ZFIN;Acc:ZDB-GENE-041008-196]
Coordinates
chr3:36322086-36322620:-
Coord C1 exon
chr3:36322470-36322620
Coord A exon
chr3:36322297-36322380
Coord C2 exon
chr3:36322086-36322202
Length
84 bp
Sequences
Splice sites
3' ss Seq
ACTATGTATTAAATTGACAGAAT
3' ss Score
3.1
5' ss Seq
AAGGTATGA
5' ss Score
9.11
Exon sequences
Seq C1 exon
ATCACAGCATCTGCAAAGAGCTAAAACAGCCTACTCCAACTACCACAATGACTATGAAAACCTCAATAGCTGGCTTTCCCGGATACCAAACTATGAGCCACGTGAAACTGATGACGTTAGACAGATTGACTCAAAACTGAAAAATCAAAGA
Seq A exon
AATCTGCTCTCTGACATCGCGAGGAAGGAATCAGACCTAAACAATGTGTCAAGAAATGCGCAGCTTTATCAGCAAGCAGTAAAG
Seq C2 exon
GACTATGAAAATGAAGCAGAGCGGTTTAAATCCATCCTCGACCTTGAAGACGGCTTGGTTCCCCAGACATACAAAAGGAGCAGACTTGAATCTCCTGCCATGAAAGTGAATAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101043-'25-24,'25-23,26-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.725 A=0.750 C2=0.333
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCTTTCCCGGATACCAAAC
R:
TGGCAGGAGATTCAAGTCTGC
Band lengths:
181-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]