RnoEX0068682 @ rn6
Exon Skipping
Gene
ENSRNOG00000002930 | Ppl
Description
periplakin [Source:RGD Symbol;Acc:1305511]
Coordinates
chr10:10682488-10684693:+
Coord C1 exon
chr10:10682488-10682638
Coord A exon
chr10:10683825-10683908
Coord C2 exon
chr10:10684577-10684693
Length
84 bp
Sequences
Splice sites
3' ss Seq
CAGTATCTCTTGCTTCACAGAAC
3' ss Score
7.61
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GGCCCAGAGCCTGCAGAGTGCCAGGGATGCCTACAGTGAATACTGCCGAGGTTATGACCATGTGCTTCAGTTCTTGGTCAAGACTCCCAGTTATGAGCCCCAGGAGACAGACAGCCTCAGCCAGATGGAGACCAAACTGAAGAACCAGAAG
Seq A exon
AACTTGCTTGATGAGATAGCAAGCATGGAACAAGGGGCGCAGAAGGTCTACGCAGACTCCCAACAGTACCAGCAAGCAGTGAAG
Seq C2 exon
GACTATGAGCTTGAAGCAGAGAAGCTAAGGTCCCTGCTGGACCTGGAGAACGGACGGAACAGCCATGTGAACAAGAGAGCCAGGCTGCAGTCTCCTGCTGCCAAAGTGAAGGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002930-'20-19,'20-18,21-19
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.392 A=0.286 C2=0.564
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGTTATGAGCCCCAGGAGA
R:
TTCCTTCACTTTGGCAGCAGG
Band lengths:
179-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]