GgaEX6013103 @ galGal4
Exon Skipping
Gene
ENSGALG00000002201 | PPL
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NV96]
Coordinates
chr14:13259023-13260085:-
Coord C1 exon
chr14:13259935-13260085
Coord A exon
chr14:13259565-13259648
Coord C2 exon
chr14:13259023-13259139
Length
84 bp
Sequences
Splice sites
3' ss Seq
TGCATCTTTGTTTGTCCCAGGCG
3' ss Score
8.55
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
AACACAGACCCTGCAGAAAGCAAAGAGTGCCTATTCCAACTACCGCACAAACTATGACAAAATCAACCAGTTCCTTTGCAACATACCCAACTACGAGCCGCAGGAGACAGACAACATCCAGCAGGTGGAAGTGAAGCTGAAGAACCAAGCG
Seq A exon
GCGCTCCTTGGTGACATCGCAAGCAAAGAACAGGAGGTGCAAAAGGTCTCTGCCACAGCTCAGCAGTACCAGCAGGCAGTAAAG
Seq C2 exon
GACTACGAGCTGGAAGCTGAGAAGCTACGGTCCATCCTCGACCTTGAGAATGGACGCAATGGGTACATGAGCAAGAAGCCTAGGCTGCAATCTCCAGCCGCAAAAGTGAAAGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002201-'22-23,'22-22,23-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.235 A=0.000 C2=0.436
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCAGGAGACAGACAACATCC
R:
TCCTCTTTCACTTTTGCGGCT
Band lengths:
169-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]