GgaEX6013103 @ galGal3
Exon Skipping
Gene
ENSGALG00000002201 | Q6PVZ7_CHICK
Description
NA
Coordinates
chr14:14025654-14026716:-
Coord C1 exon
chr14:14026566-14026716
Coord A exon
chr14:14026196-14026279
Coord C2 exon
chr14:14025654-14025770
Length
84 bp
Sequences
Splice sites
3' ss Seq
TGCATCTTTGTTTGTCCCAGGCG
3' ss Score
8.55
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
AACACAGACCCTGCAGAAAGCAAAGAGTGCCTATTCCAACTACCGCACAAACTATGACAAAATCAACCAGTTCCTTTGCAACATACCCAACTACGAGCCGCAGGAGACAGACAACATCCAGCAGGTGGAAGTGAAGCTGAAGAACCAAGCG
Seq A exon
GCGCTCCTTGGTGACATCGCAAGCAAAGAACAGGAGGTGCAAAAGGTCTCTGCCACAGCTCAGCAGTACCAGCAGGCAGTAAAG
Seq C2 exon
GACTACGAGCTGGAAGCTGAGAAGCTACGGTCCATCCTCGACCTTGAGAATGGACGCAATGGGTACATGAGCAAGAAGCCTAGGCTGCAATCTCCAGCCGCAAAAGTGAAAGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002201-'19-19,'19-18,20-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.235 A=0.000 C2=0.436
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCAGGAGACAGACAACATCC
R:
TCCTCTTTCACTTTTGCGGCT
Band lengths:
169-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]