DreEX6017869 @ danRer10
Exon Skipping
Gene
ENSDARG00000100972 | myh11b
Description
myosin, heavy chain 11b, smooth muscle [Source:ZFIN;Acc:ZDB-GENE-101124-2]
Coordinates
chr3:36558675-36560247:-
Coord C1 exon
chr3:36560184-36560247
Coord A exon
chr3:36559983-36560081
Coord C2 exon
chr3:36558675-36558818
Length
99 bp
Sequences
Splice sites
3' ss Seq
CTTAACATCTCTGAATCCAGACC
3' ss Score
3.95
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
GGTAAATTTATCAAAATCAACTTTGACAACACCGGCTACATCGTTGGAGCAAACATTGAAACGT
Seq A exon
ACCTCCTGGAAAAGTCTCGCTGTATCCGACAGGCCAAAATCGAGAGATCCTTCCACATCTTCTACTATATGGTGGCTGGAGCAAAAGACAAAATGCGAG
Seq C2 exon
AGGAGCTCTTGCTAGAGGACTTTGCTAACTACCGTTTCCTGGTGGCTGGACATGTCCAGGTTCAAAACCAGCAAGATGACGAGATGTTAGAGGAGACTCTTGAGGCCATGGAGGTTCTGGGCTTCAACGAGGAAGAACGAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100972-'6-8,'6-7,7-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(3.1=100)
A:
PF0006316=Myosin_head=FE(4.9=100)
C2:
PF0006316=Myosin_head=FE(7.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAACACCGGCTACATCGTT
R:
CTCGTTGAAGCCCAGAACCTC
Band lengths:
171-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]