MmuEX6060960 @ mm10
Exon Skipping
Gene
ENSMUSG00000018830 | Myh11
Description
myosin, heavy polypeptide 11, smooth muscle [Source:MGI Symbol;Acc:MGI:102643]
Coordinates
chr16:14239396-14245564:-
Coord C1 exon
chr16:14245501-14245564
Coord A exon
chr16:14244805-14244903
Coord C2 exon
chr16:14239396-14239539
Length
99 bp
Sequences
Splice sites
3' ss Seq
CTTAACTTCTCACCAACCAGATC
3' ss Score
6.27
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
GGCAAGTTCATTCGCATCAACTTCGATGTCACTGGTTACATTGTAGGTGCCAATATTGAAACAT
Seq A exon
ATCTTCTGGAAAAGTCTAGGGCTATTCGACAGGCTAGGGATGAGAGAACATTTCACATCTTCTACTACCTGCTCGCCGGAGCCAAGGAAAAGATGAAAA
Seq C2 exon
GTGACCTGCTTTTGGAGAGCTTCAACAGCTACACATTTTTATCCAATGGCTTTGTGCCCATCCCAGCTGCACAAGATGATGAGATGTTCCAGGAGACACTGGAAGCCATGTCTATCATGGGCTTCAATGAAGAGGAACAGCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000018830-'17-16,'17-12,19-16=AN
Average complexity
A_C3
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(3.1=100)
A:
PF0006316=Myosin_head=FE(15.4=100)
C2:
PF0006316=Myosin_head=FE(7.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAAGTTCATTCGCATCAACT
R:
CTTCCTGGCACTTCTACTGCT
Band lengths:
130-229
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types