GgaEX6012664 @ galGal4
Exon Skipping
Gene
ENSGALG00000006520 | MYH11
Description
myosin-11 [Source:RefSeq peptide;Acc:NP_990605]
Coordinates
chr14:7581741-7584756:-
Coord C1 exon
chr14:7584693-7584756
Coord A exon
chr14:7582670-7582768
Coord C2 exon
chr14:7581741-7581884
Length
99 bp
Sequences
Splice sites
3' ss Seq
CTAACATACTTGACAAACAGATT
3' ss Score
4.34
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
GGCAAATTTATCCGCATCAACTTTGATGTGACAGGCTACATTGTCGGAGCAAACATAGAGACTT
Seq A exon
ATTTGCTTGAAAAATCCCGTGCTATTCGTCAGGCTAAAGATGAGCGAACATTTCATATCTTTTACTATTTGATTGCTGGAGCTTCTGAACAAATGAGAA
Seq C2 exon
ATGATCTGCTGCTGGAGGGCTTCAACAACTACACCTTTCTATCTAATGGTCACGTTCCTATTCCTGCTCAACAAGATGATGAGATGTTCCAGGAGACCTTGGAAGCAATGACAATTATGGGCTTTACTGAGGAGGAACAGACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006520-'14-10,'14-9,16-10=AN
Average complexity
A_S
Mappability confidence:
89%=80=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.041
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(3.4=100)
A:
PF0006316=Myosin_head=FE(5.4=100)
C2:
PF0006316=Myosin_head=FE(7.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAGGCTACATTGTCGGAGC
R:
TGTTCCTCCTCAGTAAAGCCCA
Band lengths:
174-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]