RnoEX6046040 @ rn6
Exon Skipping
Gene
ENSRNOG00000057880 | Myh11
Description
myosin heavy chain 11 [Source:RGD Symbol;Acc:3136]
Coordinates
chr10:801595-805856:+
Coord C1 exon
chr10:801595-801658
Coord A exon
chr10:802037-802135
Coord C2 exon
chr10:805713-805856
Length
99 bp
Sequences
Splice sites
3' ss Seq
CTTAACTTCTTGCCAACCAGATC
3' ss Score
6.47
5' ss Seq
GAAGTGAGT
5' ss Score
7.97
Exon sequences
Seq C1 exon
GGCAAGTTCATTCGCATCAACTTTGATGTCACTGGTTACATTGTGGGTGCCAATATCGAAACAT
Seq A exon
ATCTTCTGGAAAAGTCTCGGGCTATTCGACAGGCTAGGGACGAGAGAACGTTCCACATCTTCTACTATCTGATCGCTGGAGCCAAGGAGAAGATGAGAA
Seq C2 exon
ATGACCTACTTTTGGAGAGCTTCAACAGCTACACATTTTTATCCAATGGCTTTGTGCCCATCCCAGCTGCACAAGATGATGAGATGTTCCAGGAGACACTAGAGGCCATGTCCATCATGGGCTTCAGTGAAGAGGAACAGCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000057880-'16-18,'16-15,17-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(3.1=100)
A:
PF0006316=Myosin_head=FE(14.3=100)
C2:
PF0006316=Myosin_head=FE(7.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGGTTACATTGTGGGTGCC
R:
GTTCCTCTTCACTGAAGCCCA
Band lengths:
172-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]