MmuEX6060961 @ mm10
Exon Skipping
Gene
ENSMUSG00000018830 | Myh11
Description
myosin, heavy polypeptide 11, smooth muscle [Source:MGI Symbol;Acc:MGI:102643]
Coordinates
chr16:14236369-14244903:-
Coord C1 exon
chr16:14244805-14244903
Coord A exon
chr16:14239396-14239539
Coord C2 exon
chr16:14236369-14236464
Length
144 bp
Sequences
Splice sites
3' ss Seq
ACTCTGCTCCTTTCTTGTAGGTG
3' ss Score
11.5
5' ss Seq
TAGGTGAGT
5' ss Score
8.83
Exon sequences
Seq C1 exon
ATCTTCTGGAAAAGTCTAGGGCTATTCGACAGGCTAGGGATGAGAGAACATTTCACATCTTCTACTACCTGCTCGCCGGAGCCAAGGAAAAGATGAAAA
Seq A exon
GTGACCTGCTTTTGGAGAGCTTCAACAGCTACACATTTTTATCCAATGGCTTTGTGCCCATCCCAGCTGCACAAGATGATGAGATGTTCCAGGAGACACTGGAAGCCATGTCTATCATGGGCTTCAATGAAGAGGAACAGCTAG
Seq C2 exon
CCATCTTGAAGGTAGTATCATCTGTCCTTCAGCTTGGAAACATTGTCTTCAAGAAGGAGCGAAACACAGACCAGGCATCCATGCCTGATAACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000018830-'19-18,'19-16,21-18=AN
Average complexity
A_C3
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.121
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(15.4=100)
A:
PF0006316=Myosin_head=FE(7.0=100)
C2:
PF0006316=Myosin_head=FE(4.7=100)
Main Skipping Isoform:
ENSMUST00000090287fB13219
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCAAACCCTTTGCCCTTTA
R:
AGCCAGGCACTTGCATTGTAG
Band lengths:
244-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types