RnoEX6046039 @ rn6
Exon Skipping
Gene
ENSRNOG00000057880 | Myh11
Description
myosin heavy chain 11 [Source:RGD Symbol;Acc:3136]
Coordinates
chr10:802037-808871:+
Coord C1 exon
chr10:802037-802135
Coord A exon
chr10:805713-805856
Coord C2 exon
chr10:808776-808871
Length
144 bp
Sequences
Splice sites
3' ss Seq
ACTTTCTTCCTTCCTTGTAGATG
3' ss Score
11.79
5' ss Seq
TAGGTGAGT
5' ss Score
8.83
Exon sequences
Seq C1 exon
ATCTTCTGGAAAAGTCTCGGGCTATTCGACAGGCTAGGGACGAGAGAACGTTCCACATCTTCTACTATCTGATCGCTGGAGCCAAGGAGAAGATGAGAA
Seq A exon
ATGACCTACTTTTGGAGAGCTTCAACAGCTACACATTTTTATCCAATGGCTTTGTGCCCATCCCAGCTGCACAAGATGATGAGATGTTCCAGGAGACACTAGAGGCCATGTCCATCATGGGCTTCAGTGAAGAGGAACAGCTAG
Seq C2 exon
CCATCTTGAAGGTAGTATCATCCGTCCTTCAGCTTGGAAACATTGTCTTCAAGAAGGAGCGAAACACAGACCAGGCATCCATGCCTGATAACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000057880-'17-19,'17-18,19-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.121
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(14.3=100)
A:
PF0006316=Myosin_head=FE(7.0=100)
C2:
PF0006316=Myosin_head=FE(4.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTCTGGAAAAGTCTCGGGC
R:
CATGGATGCCTGGTCTGTGTT
Band lengths:
181-325
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]