GgaEX6012665 @ galGal3
Exon Skipping
Gene
ENSGALG00000006520 | MYH11_CHICK
Description
NA
Coordinates
chr14:7646849-7649276:-
Coord C1 exon
chr14:7649178-7649276
Coord A exon
chr14:7648249-7648392
Coord C2 exon
chr14:7646849-7646944
Length
144 bp
Sequences
Splice sites
3' ss Seq
TACACTTCTTTGTCTTTTAGATG
3' ss Score
10.5
5' ss Seq
CATGTAAGA
5' ss Score
5.58
Exon sequences
Seq C1 exon
ATTTGCTTGAAAAATCCCGTGCTATTCGTCAGGCTAAAGATGAGCGAACATTTCATATCTTTTACTATTTGATTGCTGGAGCTTCTGAACAAATGAGAA
Seq A exon
ATGATCTGCTGCTGGAGGGCTTCAACAACTACACCTTTCTATCTAATGGTCACGTTCCTATTCCTGCTCAACAAGATGATGAGATGTTCCAGGAGACCTTGGAAGCAATGACAATTATGGGCTTTACTGAGGAGGAACAGACAT
Seq C2 exon
CTATACTGAGGGTTGTTTCGTCTGTCCTACAGCTGGGCAATATTGTCTTCAAGAAGGAGAGAAACACTGATCAAGCTTCTATGCCTGACAATACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006520-'13-13,'13-12,14-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.041 C2=0.182
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.8=100)
A:
PF0006316=Myosin_head=FE(7.0=100)
C2:
PF0006316=Myosin_head=FE(4.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGCTTGAAAAATCCCGTGCT
R:
CAGTATTGTCAGGCATAGAAGCT
Band lengths:
194-338
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]